genogeographer-package |
genogeographer: Methods for analysing forensic Ancestry Informative Markers |
app_genogeo |
Shiny application for GenoGeoGrapher |
bar_colour |
bar_colour |
error_bar_plot |
Plot log likelihoods of profiles with approximate confidence intervals |
exponent_tilt |
P-values from Importing Sampling using Exponential tilting |
genogeo |
Likelihood ratio tests for AIMs |
genogeographer |
genogeographer: Methods for analysing forensic Ancestry Informative Markers |
kidd_loci |
Kenn Kidd Lab markers |
LR_table |
Compute pairwise likelihood ratios |
main_alleles |
AIMs markers in Precision ID Ancestry Panel (Thermo Fisher Scientific) |
map_plot |
Plot LTR z-scores on map |
pops_to_DB |
Pre-compute the scores for a given reference database |
profile_AA_x0 |
Function that compute the genotype probability for each population (rows in df) |
profile_admixture |
Compute the z-score (and more) for admixed hypotheses |
random_AIMs_profile |
Simulate a random AIMs profile |
seldin_loci |
Seldin Lab markers |
simulate_pops |
Simulate random populations |