apeData |
ApeData Ape phylogeny in ape format, monophyletic clades, and maximum and minimum ages |
estimateBound |
Estimate a Uniform Distribution for MCMCtree |
estimateCauchy |
Estimate Cauchy Distribution for MCMCtree |
estimateFixed |
Fixed Age for MCMCtree analysis input |
estimateGamma |
Estimate Gamma Distribution for MCMCtree analysis |
estimateSkewNormal |
Estimate Skew Normal for MCMCtree analysis |
estimateSkewT |
Estimate Skew-t Distribution for MCMCtree analysis |
estimateUpper |
Estimate Upper Age for MCMCtree analysis |
MCMC.tree.plot |
Plot time-scaled phylogenies |
MCMCtree.output |
MCMCtree.output |
MCMCtreePhy |
MCMCtreePhy |
nodeToPhy |
Add Node Constraints to Tree in MCMCtree Format |
plotMCMCtree |
Plot distribution from MCMCtree node estimations |
priorPosterior |
priorPosterior |
readMCMCtree |
Read MCMCtree output tree into R |
tipDes |
Find Descendent Tips From A Common Ancestor |