Lightweight Graph Based Multiple Comparison Procedures

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Documentation for package ‘gMCPLite’ version 0.1.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

B C E F G H I J M N P R S T W

-- B --

BauerEtAl2001	Functions that create different example graphs
bdiagNA	Create a Block Diagonal Matrix with NA outside the diagonal
bonferroni.test	Weighted Bonferroni-test
bonferroni.trimmed.simes.test	Trimmed Simes test for intersections of two hypotheses and otherwise weighted Bonferroni-test
BonferroniHolm	Functions that create different example graphs
BretzEtAl2009a	Functions that create different example graphs
BretzEtAl2009b	Functions that create different example graphs
BretzEtAl2009c	Functions that create different example graphs
BretzEtAl2011	Functions that create different example graphs

-- C --

checkCorrelation	Check correlation matrix
cycleGraph	Functions that create different example graphs

-- E --

edgeAttr	Class graphMCP
edgeAttr-method	Class graphMCP
edgeAttr<-	Class graphMCP
edgeAttr<--method	Class graphMCP
Entangled1Maurer2012	Functions that create different example graphs
Entangled2Maurer2012	Functions that create different example graphs
entangledMCP	Class entangledMCP
entangledMCP-class	Class entangledMCP
exampleGraphs	Functions that create different example graphs

-- F --

fallback	Functions that create different example graphs
Ferber2011	Functions that create different example graphs
FerberTimeDose2011	Functions that create different example graphs
fixedSequence	Functions that create different example graphs

-- G --

generalSuccessive	Functions that create different example graphs
generatePvals	generatePvals
generateWeights	generateWeights
getMatrices	Class entangledMCP
getMatrices-method	Class entangledMCP
getMatrix	Class graphMCP
getMatrix-method	Class graphMCP
getNodes	Class graphMCP
getNodes-method	Class entangledMCP
getNodes-method	Class graphMCP
getRejected	Class graphMCP
getRejected-method	Class entangledMCP
getRejected-method	Class gMCPResult
getRejected-method	Class gPADInterim
getRejected-method	Class graphMCP
getWeights	Class graphMCP
getWeights-method	Class entangledMCP
getWeights-method	Class gMCPResult
getWeights-method	Class gPADInterim
getWeights-method	Class graphMCP
getXCoordinates	Class graphMCP
getXCoordinates-method	Class entangledMCP
getXCoordinates-method	Class graphMCP
getYCoordinates	Class graphMCP
getYCoordinates-method	Class entangledMCP
getYCoordinates-method	Class graphMCP
gMCP	Graph based Multiple Comparison Procedures
gMCP.extended	Graph based Multiple Comparison Procedures
gMCPResult	Class gMCPResult
gMCPResult-class	Class gMCPResult
gPADInterim	Class gPADInterim
gPADInterim-class	Class gPADInterim
graph2matrix	Matrix2Graph and Graph2Matrix
graphMCP	Class graphMCP
graphMCP-class	Class graphMCP
graphTest	Multiple testing using graphs

-- H --

hGraph	Create multiplicity graphs using ggplot2
HommelEtAl2007	Functions that create different example graphs
HommelEtAl2007Simple	Functions that create different example graphs
HungEtWang2010	Functions that create different example graphs
HuqueAloshEtBhore2011	Functions that create different example graphs

-- I --

improvedFallbackI	Functions that create different example graphs
improvedFallbackII	Functions that create different example graphs
improvedParallelGatekeeping	Functions that create different example graphs

-- J --

joinGraphs

Joins two graphMCP objects

-- M --

matrix2graph	Matrix2Graph and Graph2Matrix
MaurerEtAl1995	Functions that create different example graphs

-- N --

nodeAttr	Class graphMCP
nodeAttr-method	Class graphMCP
nodeAttr<-	Class graphMCP
nodeAttr<--method	Class graphMCP

-- P --

parallelGatekeeping	Functions that create different example graphs
parametric.test	Weighted parametric test
permutations	Permutation for a design matrix
placeNodes	Placement of graph nodes
plot-method	Class gMCPResult
plot-method	Class gPADInterim
plot-method	Class graphMCP
print-method	Class entangledMCP
print-method	Class gMCPResult
print-method	Class gPADInterim
print-method	Class graphMCP

-- R --

rejectNode	Rejects a node/hypothesis and updates the graph accordingly.
replaceVariables	Replaces variables in a general graph with specified numeric values

-- S --

setEdge	Class graphMCP
setEdge-method	Class graphMCP
setRejected<-	Class graphMCP
setRejected<--method	Class graphMCP
setWeights	Class graphMCP
setWeights-method	Class graphMCP
simConfint	Simultaneous confidence intervals for sequentially rejective multiple test procedures
simConfint-method	Simultaneous confidence intervals for sequentially rejective multiple test procedures
simes.on.subsets.test	Simes on subsets, otherwise Bonferroni
simes.test	Weighted Simes test
simpleSuccessiveI	Functions that create different example graphs
simpleSuccessiveII	Functions that create different example graphs
subgraph	Get a subgraph
substituteEps	Substitute Epsilon

-- T --

truncatedHolm

Functions that create different example graphs

-- W --

WangTing2014	Functions that create different example graphs
weighted.test.functions	Weighted Test Functions for use with gMCP