PheCAP-package |
High-Throughput Phenotyping with EHR using a Common Automated Pipeline |
ehr_data |
A Synthetic EHR Dataset |
PheCAP |
High-Throughput Phenotyping with EHR using a Common Automated Pipeline |
PhecapData |
Define or Read Datasets for Phenotyping |
PhecapSurrogate |
Define a Surrogate Variable used in Surrogate-Assisted Feature Extraction (SAFE) |
phecap_generate_dictionary_file |
Generate a Dictionary File for Note Parsing |
phecap_perform_majority_voting |
Perform Majority Voting on the CUIs from Multiple Knowledge Sources |
phecap_plot_roc_curves |
Plot ROC and Related Curves for Phenotyping Models |
phecap_predict_phenotype |
Predict Phenotype |
phecap_run_feature_extraction |
Run Surrogate-Assisted Feature Extraction (SAFE) |
phecap_train_phenotyping_model |
Train Phenotyping Model using the Training Labels |
phecap_validate_phenotyping_model |
Validate the Phenotyping Model using the Validation Labels |