markophylo-package |
Markov chain models for phylogenetic trees. |
estimaterates |
Estimate substitution rate matrix. |
estimaterates_f |
Estimate substitution rate matrix. |
markophylo |
Markov chain models for phylogenetic trees. |
patterns |
Unique phyletic patterns with counts. |
plottree |
Plot the tree used with different hypothesized branch groupings (or clades) following unique rates coloured differently. |
print.markophylo |
Print summary information for the model fit. |
simdata1 |
Simulated data. |
simdata2 |
Simulated data. |
simdata3 |
Simulated data. |
simdata4 |
Simulated data. |
simdata5 |
Simulated data. |