Markov Chain Models for Phylogenetic Trees
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Documentation for package ‘markophylo’ version 1.0.9
Help Pages
| markophylo-package | Markov chain models for phylogenetic trees. |
| estimaterates | Estimate substitution rate matrix. |
| estimaterates_f | Estimate substitution rate matrix. |
| markophylo | Markov chain models for phylogenetic trees. |
| patterns | Unique phyletic patterns with counts. |
| plottree | Plot the tree used with different hypothesized branch groupings (or clades) following unique rates coloured differently. |
| print.markophylo | Print summary information for the model fit. |
| simdata1 | Simulated data. |
| simdata2 | Simulated data. |
| simdata3 | Simulated data. |
| simdata4 | Simulated data. |
| simdata5 | Simulated data. |