colfun0 |
default colonization function |
dat |
Microcosm experimental data |
density_fun0 |
Default density function for prior |
detfun0 |
default deterministic function |
detfun0_sin |
deterministic function with time-varying carrying capacity |
EDMfun0 |
EDM deterministic function |
getcm |
Get rates |
ilogit |
Inverse logit |
indexsort |
Sort output of particle filter |
inv_fun0 |
Default inverse transormation function |
likelihood0 |
Default likelihood function |
likelihood_EDM_piecewise |
calculate likelihood for piecewise data |
logit |
Logit |
logitnormal_imode |
Get inverse logit-normal mode |
lognormal_imode |
Get inverse log-normal mode |
makeblock |
Make an embedding block from timeseries data |
makedynamics_general |
Simulate general time series |
obsfun0 |
default observation noise function |
parseparam0 |
Parse parameters |
particleFilterLL |
particle filter |
particleFilterLL_piecewise |
run particle filter across piecewise data |
process_scof |
Process S-mapping coefficients |
procfun0 |
default process noise function |
procfun_ct |
continuous-time process noise function |
sampler_fun0 |
Default sampler function for prior |
sdproc_abstract |
calculate estimated total variance |
S_map_Sugihara1994 |
Apply S-mapping algorithm from Sugihara 1994 |