A Bayesian No-Effect- Concentration (NEC) Algorithm


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Documentation for package ‘bayesnec’ version 1.0.1

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bayesnec-package The 'bayesnec' package.
amend amend
amend.bayesmanecfit amend.bayesmanecfit
amend.default amend.default
average_endpoints average_endpoints
bayesmanecfit Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesmanecfit-class Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesnec The 'bayesnec' package.
bayesnecfit Class 'bayesnecfit' of models fitted with the 'brms' package
bayesnecfit-class Class 'bayesnecfit' of models fitted with the 'brms' package
beta_binomial2 Custom beta-binomial family
beta_binomial2_lpmf beta_binomial2_lpmf
beta_binomial2_rng beta_binomial2_rng
bind_ecx bind_nec
bind_nec bind_nec
bnec bnec
check_chains check_chains
check_chains.bayesmanecfit check_chains.bayesmanecfit
check_chains.bayesnecfit check_chains.bayesnecfit
check_chains.default check_chains.default
check_data check_data
check_models check_models
check_priors check_priors
check_priors.bayesmanecfit check_priors.bayesmanecfit
check_priors.bayesnecfit check_priors.bayesnecfit
check_priors.default check_priors.default
compare_endpoints compare_endpoints
compare_fitted compare_fitted
compare_posterior compare_posterior
define_prior define_prior
dispersion Posterior dispersion
ecx ecx
ecx.bayesmanecfit ecx.bayesmanecfit
ecx.bayesnecfit ecx.bayesnecfit
ecx.default ecx.default
expand_manec expand_manec
expand_nec expand_nec
extract_simdat extract_simdat
fit_bayesnec fit_bayesnec
ggbnec ggbnec
ggbnec.bayesmanecfit ggbnec.bayesmanecfit
ggbnec.bayesnecfit ggbnec.bayesnecfit
ggbnec.default ggbnec.default
ggbnec_data ggbnec_data
ggbnec_data.bayesmanecfit ggbnec_data
ggbnec_data.bayesnecfit ggbnec_data
ggbnec_data.default ggbnec_data.default
is_bayesmanecfit Checks if argument is a 'bayesmanecfit' object
is_bayesnecfit Checks if argument is a 'bayesnecfit' object
is_manecsummary Checks if argument is a 'manecsummary' object
is_necsummary Checks if argument is a 'necsummary' object
is_prebayesnecfit Checks if argument is a 'prebayesnecfit' object
log_lik_beta_binomial2 log_lik_beta_binomial2
make_good_inits make_good_inits
make_inits make_inits
manecsummary Class 'manecsummary' of models fitted with the 'brms' package
manecsummary-class Class 'manecsummary' of models fitted with the 'brms' package
manec_example Example bayesmanecfit object
models models
nec nec
nec.bayesmanecfit nec.bayesmanecfit
nec.bayesnecfit nec.bayesnecfit
nec.default nec.default
necsummary Class 'necsummary' of models fitted with the 'brms' package
necsummary-class Class 'necsummary' of models fitted with the 'brms' package
nec_data Example data of non-linear decay
nsec nsec
nsec.bayesmanecfit nsec.bayesmanecfit
nsec.bayesnecfit nsec.bayesnecfit
nsec.default nsec.default
plot.bayesmanecfit plot.bayesmanecfit
plot.bayesnecfit plot.bayesnecfit
posterior_epred_beta_binomial2 posterior_epred_beta_binomial2
posterior_predict_beta_binomial2 posterior_predict_beta_binomial2
prebayesnecfit Class 'prebayesnecfit' of models fitted with the 'brms' package
prebayesnecfit-class Class 'prebayesnecfit' of models fitted with the 'brms' package
predict.bayesmanecfit predict.bayesmanecfit
predict.bayesnecfit predict.bayesnecfit
prep_raw_data prep_raw_data
print.bayesmanecfit print.bayesmanecfit
print.bayesnecfit print.bayesnecfit
print.manecsummary print.manecsummary
print.necsummary print.necsummary
pull_out pull_out
pull_prior pull_prior
rhat.bayesmanecfit rhat.bayesmanecfit
rhat.bayesnecfit rhat.bayesnecfit
sample_priors sample_priors
set_distribution Sets distribution based on vector
show_params show_params
summary.bayesmanecfit summary.bayesmanecfit
summary.bayesnecfit summary.bayesnecfit
validate_family validate_family
validate_priors validate_priors