A Bayesian No-Effect- Concentration (NEC) Algorithm


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Documentation for package ‘bayesnec’ version 2.0.2

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bayesnec-package The 'bayesnec' package.
+.bnecfit "Add" multiple 'bnecfit' objects into one single 'bayesmanecfit' object containing Bayesian model averaging statistics.
amend Amends an existing 'bayesmanecfit' object, for example, by adding or removing fitted models.
autoplot.bayesmanecfit autoplot.bayesmanecfit
autoplot.bayesnecfit autoplot.bayesnecfit
average_endpoints average_endpoints
bayesmanecfit Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesmanecfit-class Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesnec The 'bayesnec' package.
bayesnecfit Class 'bayesnecfit' of models fitted with the 'brms' package
bayesnecfit-class Class 'bayesnecfit' of models fitted with the 'brms' package
bayesnecformula Set up a model formula for use in 'bayesnec'
beta_binomial2 Custom beta-binomial family
beta_binomial2_lpmf beta_binomial2_lpmf
beta_binomial2_rng beta_binomial2_rng
bnec bnec
bnecfit Class 'bnecfit' of models fitted with function 'bnec'
bnecfit-class Class 'bnecfit' of models fitted with function 'bnec'
bnf Set up a model formula for use in 'bayesnec'
c.bnecfit Concatenate multiple 'bnecfit' objects into one single 'bayesmanecfit' object containing Bayesian model averaging statistics.
check_chains check_chains
check_chains.bayesmanecfit check_chains.bayesmanecfit
check_chains.bayesnecfit check_chains.bayesnecfit
check_chains.default check_chains.default
check_formula Check if input model formula is appropriate to use with 'bayesnec'
check_priors Plots the prior and posterior parameter probability densities from an object of class 'bayesnecfit' or 'bayesmanecfit'.
compare_endpoints compare_endpoints
compare_fitted compare_fitted
compare_posterior compare_posterior
dispersion Posterior dispersion
ecx Extracts the predicted ECx value as desired from an object of class 'bayesnecfit' or 'bayesnecfit'.
expand_manec Extracts a range of statistics from a list of 'prebayesnecfit' objects.
expand_nec Extracts a range of statistics from a 'prebayesnecfit' object.
formula.bayesmanecfit formula.bayesmanecfit
formula.bayesnecfit formula.bayesnecfit
ggbnec_data Creates the data.frame for plotting with 'autoplot'.
herbicide Herbicide phytotoxicity data
is_manecsummary Checks if argument is a 'manecsummary' object
is_necsummary Checks if argument is a 'necsummary' object
log_lik_beta_binomial2 log_lik_beta_binomial2
make_brmsformula Expose the final 'brmsformula'
manecsummary Class 'manecsummary' of models fitted with the 'brms' package
manecsummary-class Class 'manecsummary' of models fitted with the 'brms' package
manec_example Example bayesmanecfit object
model.frame.bayesmanecfit model.frame.bayesmanecfit
model.frame.bayesnecfit model.frame.bayesnecfit
model.frame.bayesnecformula Extracting the model frame from a 'bayesnecformula'
models models
nec Extracts the predicted NEC value as desired from an object of class 'bayesnecfit' or 'bayesmanecfit'.
necsummary Class 'necsummary' of models fitted with the 'brms' package
necsummary-class Class 'necsummary' of models fitted with the 'brms' package
nec_data Example data of non-linear decay
nsec Extracts the predicted NSEC value as desired from an object of class 'bayesnecfit' or 'bayesmanecfit'.
plot.bayesmanecfit plot.bayesmanecfit
plot.bayesnecfit plot.bayesnecfit
posterior_epred_beta_binomial2 posterior_epred_beta_binomial2
posterior_predict_beta_binomial2 posterior_predict_beta_binomial2
prebayesnecfit Class 'prebayesnecfit' of models fitted with the 'brms' package
prebayesnecfit-class Class 'prebayesnecfit' of models fitted with the 'brms' package
predict.bayesmanecfit predict.bayesmanecfit
predict.bayesnecfit predict.bayesnecfit
print.bayesmanecfit print.bayesmanecfit
print.bayesnecfit print.bayesnecfit
print.manecsummary print.manecsummary
print.necsummary print.necsummary
pull_out pull_out
pull_prior pull_prior
rhat.bayesmanecfit rhat.bayesmanecfit
rhat.bayesnecfit rhat.bayesnecfit
sample_priors sample_priors
show_params show_params
summary.bayesmanecfit summary.bayesmanecfit
summary.bayesnecfit summary.bayesnecfit
update.bnecfit Update an object of class 'bnecfit' as fitted by function 'bnec'.