A Bayesian No-Effect- Concentration (NEC) Algorithm

---

Documentation for package ‘bayesnec’ version 2.1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bayesnec-package	The 'bayesnec' package.
"beta_binomial"	Custom beta-binomial family
+.bnecfit	"Add" multiple 'bnecfit' objects into one single 'bayesmanecfit' object containing Bayesian model averaging statistics.
amend	Amends an existing 'bayesmanecfit' object
autoplot	bayesnec standard ggplot2 plotting method
autoplot.bayesmanecfit	bayesnec standard ggplot2 plotting method
autoplot.bayesnecfit	bayesnec standard ggplot2 plotting method
average_estimates	average_estimates
bayesmanecfit	Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesmanecfit-class	Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesnec	The 'bayesnec' package.
bayesnecfit	Class 'bayesnecfit' of models fitted with the 'brms' package
bayesnecfit-class	Class 'bayesnecfit' of models fitted with the 'brms' package
bayesnecformula	Set up a model formula for use in 'bayesnec'
bnec	bnec
bnecfit	Class 'bnecfit' of models fitted with function 'bnec'
bnecfit-class	Class 'bnecfit' of models fitted with function 'bnec'
bnec_newdata	bnec_newdata
bnf	Set up a model formula for use in 'bayesnec'
c.bnecfit	Concatenate multiple 'bnecfit' objects into one single 'bayesmanecfit' object containing Bayesian model averaging statistics.
check_chains	Checking chain convergence
check_chains.bayesmanecfit	Checking chain convergence
check_chains.bayesnecfit	Checking chain convergence
check_formula	Check if input model formula is appropriate to use with 'bayesnec'
check_priors	Plots the prior and posterior parameter probability densities from an object of class 'bayesnecfit' or 'bayesmanecfit'.
compare_estimates	compare_estimates
compare_fitted	compare_fitted
compare_posterior	compare_posterior
dispersion	Posterior dispersion
ecx	Extracts the predicted ECx value
expand_manec	Extracts a range of statistics from a list of 'prebayesnecfit' objects.
expand_nec	Extracts a range of statistics from a 'prebayesnecfit' object.
fitted	Generates mean posterior linear predictions for objects fitted by 'bnec'
fitted.bayesmanecfit	Generates mean posterior linear predictions for objects fitted by 'bnec'
fitted.bayesnecfit	Generates mean posterior linear predictions for objects fitted by 'bnec'
formula	Retrieve formulas from models fitted by 'bnec'
formula.bayesmanecfit	Retrieve formulas from models fitted by 'bnec'
formula.bayesnecfit	Retrieve formulas from models fitted by 'bnec'
ggbnec_data	Creates the data.frame for plotting with 'autoplot'.
herbicide	Herbicide phytotoxicity data
is_manecsummary	Checks if argument is a 'manecsummary' object
is_necsummary	Checks if argument is a 'necsummary' object
make_brmsformula	Expose the final 'brmsformula'
manecsummary	Class 'manecsummary' of models fitted with the 'brms' package
manecsummary-class	Class 'manecsummary' of models fitted with the 'brms' package
manec_example	Example bayesmanecfit object
model.frame	Model.frame methods in bayesnec.
model.frame.bayesmanecfit	Model.frame methods in bayesnec.
model.frame.bayesnecfit	Model.frame methods in bayesnec.
model.frame.bayesnecformula	Model.frame methods in bayesnec.
models	models
nec	Extracts the predicted NEC value as desired from an object of class 'bayesnecfit' or 'bayesmanecfit'.
necsummary	Class 'necsummary' of models fitted with the 'brms' package
necsummary-class	Class 'necsummary' of models fitted with the 'brms' package
nec_data	Example data of non-linear decay
nsec	Extracts the predicted NSEC value as desired from an object of class 'bayesnecfit' or 'bayesmanecfit'.
plot	Generates a plot for objects fitted by 'bnec'
plot.bayesmanecfit	Generates a plot for objects fitted by 'bnec'
plot.bayesnecfit	Generates a plot for objects fitted by 'bnec'
posterior_epred	Generates posterior linear predictions for objects fitted by 'bnec'
posterior_epred.bayesmanecfit	Generates posterior linear predictions for objects fitted by 'bnec'
posterior_epred.bayesnecfit	Generates posterior linear predictions for objects fitted by 'bnec'
posterior_predict	Generates posterior predictions for objects fitted by 'bnec'
posterior_predict.bayesmanecfit	Generates posterior predictions for objects fitted by 'bnec'
posterior_predict.bayesnecfit	Generates posterior predictions for objects fitted by 'bnec'
prebayesnecfit	Class 'prebayesnecfit' of models fitted with the 'brms' package
prebayesnecfit-class	Class 'prebayesnecfit' of models fitted with the 'brms' package
predict	Generates mean posterior predictions for objects fitted by 'bnec'
predict.bayesmanecfit	Generates mean posterior predictions for objects fitted by 'bnec'
predict.bayesnecfit	Generates mean posterior predictions for objects fitted by 'bnec'
print	Prints a summary for objects fitted by 'bnec'
print.bayesmanecfit	Prints a summary for objects fitted by 'bnec'
print.bayesnecfit	Prints a summary for objects fitted by 'bnec'
pull_brmsfit	Extract and object of class 'brmsfit' from 'bayesnecfit' or 'bayesmanecfit'.
pull_brmsfit.bayesmanecfit	Extract and object of class 'brmsfit' from 'bayesnecfit' or 'bayesmanecfit'.
pull_brmsfit.bayesnecfit	Extract and object of class 'brmsfit' from 'bayesnecfit' or 'bayesmanecfit'.
pull_out	pull_out
pull_prior	pull_prior
rhat	Extract Diagnostic Quantities of 'brms' Models
rhat.bayesmanecfit	Extract Diagnostic Quantities of 'brms' Models
rhat.bayesnecfit	Extract Diagnostic Quantities of 'brms' Models
sample_priors	sample_priors
show_params	show_params
step	step
summary	Generates a summary for objects fitted by 'bnec'
summary.bayesmanecfit	Generates a summary for objects fitted by 'bnec'
summary.bayesnecfit	Generates a summary for objects fitted by 'bnec'
update.bnecfit	Update an object of class 'bnecfit' as fitted by function 'bnec'.