Check_Dupe_Columns |
checks for duplicated column names |
Check_Trunc |
Applies time duration truncation limits |
Correct_Formula_Order |
Corrects the order of terms/formula/etc |
Cox_Relative_Risk |
Calculates hazard ratios for a reference vector |
Date_Shift |
Automates creating a date difference column |
Def_Control |
Automatically assigns missing control values |
Def_Control_Guess |
Automatically assigns missing guessing control values |
Def_modelform_fix |
Automatically assigns geometric-mixture values |
Def_model_control |
Automatically assigns missing model control values |
factorize |
Splits a parameter into factors |
factorize_par |
Splits a parameter into factors in parallel |
Gather_Guesses_CPP |
Performs checks to gather a list of guesses and iterations |
gcc_version |
Checks default c++ compiler |
gen_time_dep |
Applies time dependence to parameters |
GetCensWeight |
Calculates and returns data for time by hazard and survival to estimate censoring rate |
get_os |
Checks system OS |
interact_them |
Defines Interactions |
Joint_Multiple_Events |
Automates creating data for a joint competing risks analysis |
Likelihood_Ratio_Test |
Defines the likelihood ratio test |
Linked_Dose_Formula |
Calculates Full Parameter list for Special Dose Formula |
Linked_Lin_Exp_Para |
Calculates The Additional Parameter For a linear-exponential formula with known maximum |
OMP_Check |
Checks the OMP flag |
Rcomp_version |
Checks how R was compiled |
Rcpp_version |
Checks default R c++ compiler |
Replace_Missing |
Automatically assigns missing values in listed columns |
RunCoxEventAssignment |
Approximates how many events were due to baseline vs excess risk |
RunCoxNull |
Performs basic Cox Proportional Hazards regression with the null model |
RunCoxPlots |
Performs Cox Proportional Hazard model plots |
RunCoxRegression |
Performs basic Cox Proportional Hazards regression without special options |
RunCoxRegression_Basic |
Performs basic Cox Proportional Hazards regression with a multiplicative log-linear model |
RunCoxRegression_CR |
Performs basic Cox Proportional Hazards regression with competing risks |
RunCoxRegression_Guesses_CPP |
Performs basic Cox Proportional Hazards regression, Allows for multiple starting guesses on c++ side |
RunCoxRegression_Omnibus |
Performs Cox Proportional Hazards regression using the omnibus function |
RunCoxRegression_Single |
Performs basic Cox Proportional Hazards calculation with no derivative |
RunCoxRegression_STRATA |
Performs basic Cox Proportional Hazards regression with strata effect |
RunCoxRegression_Tier_Guesses |
Performs basic cox regression, with multiple guesses, starts with solving for a single term |
RunPoissonEventAssignment |
Predicts how many events are due to baseline vs excess |
RunPoissonRegression |
Performs basic poisson regression |
RunPoissonRegression_Guesses_CPP |
Performs basic Poisson regression, Allows for multiple starting guesses on c++ side |
RunPoissonRegression_Joint_Omnibus |
Performs basic Poisson regression using the omnibus function |
RunPoissonRegression_Omnibus |
Performs basic Poisson regression using the omnibus function |
RunPoissonRegression_Single |
Performs poisson regression with no derivative calculations |
RunPoissonRegression_STRATA |
Performs poisson regression with strata effect |
RunPoissonRegression_Tier_Guesses |
Performs basic poisson regression, with multiple guesses, starts with a single term |
System_Version |
Checks OS, compilers, and OMP |
Time_Since |
Automates creating a date since a reference column |