| AIC.gips | Akaike's An Information Criterion for 'gips' class | 
| as.character.gips | Transform the 'gips' object to a character vector | 
| as.character.gips_perm | Transform the 'gips_perm' object to a character vector | 
| BIC.gips | Akaike's An Information Criterion for 'gips' class | 
| calculate_gamma_function | Calculate Gamma function | 
| compare_log_posteriories_of_perms | Compare the posteriori probabilities of 2 permutations | 
| compare_posteriories_of_perms | Compare the posteriori probabilities of 2 permutations | 
| find_MAP | Find the Maximum A Posteriori Estimation | 
| forget_perms | Forget the permutations for 'gips' object optimized with 'save_all_perms = TRUE' | 
| get_probabilities_from_gips | Extract probabilities for 'gips' object optimized with 'return_probabilities = TRUE' | 
| get_structure_constants | Get Structure Constants | 
| gips | The constructor of a 'gips' class. | 
| gips_perm | Permutation object | 
| logLik.gips | Extract the Log-Likelihood for 'gips' class | 
| log_posteriori_of_gips | A log of a posteriori that the covariance matrix is invariant under permutation | 
| new_gips | The constructor of a 'gips' class. | 
| new_gips_perm | Permutation object | 
| plot.gips | Plot optimized matrix or optimization 'gips' object | 
| prepare_orthogonal_matrix | Prepare orthogonal matrix | 
| print.gips | Printing 'gips' object | 
| print.gips_perm | Printing 'gips_perm' object | 
| print.summary.gips | Summarizing the gips object | 
| project_matrix | Project matrix after optimization | 
| summary.gips | Summarizing the gips object | 
| validate_gips | The constructor of a 'gips' class. | 
| validate_gips_perm | Permutation object |