Fast Enrichment Analysis via Circular Permutations
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Documentation for package ‘shiftR’ version 1.5
Help Pages
| shiftR-package | Fast Enrichment Analysis via Circular Permutations |
| cramerV | Calculate Cramer's V (phi) Coefficient |
| enrichmentAnalysis | Fast Enrichment Testing via Circular Permutations on Non-Binary Outcomes |
| getNOffsetsMax | Generate Random or Uniformly Spaced Permutation Offsets |
| getOffsetsAll | Generate Random or Uniformly Spaced Permutation Offsets |
| getOffsetsRandom | Generate Random or Uniformly Spaced Permutation Offsets |
| getOffsetsUniform | Generate Random or Uniformly Spaced Permutation Offsets |
| matchDatasets | Match Two Data Sets by Location |
| shiftrPermBinary | Fast Enrichment Testing on Binary Outcomes via Circular Permutations |
| shiftrPrepareLeft | Prepare Data for Fast Circular Permutation Analysis |
| shiftrPrepareRight | Prepare Data for Fast Circular Permutation Analysis |
| simulateBinary | Generate Artificial Data for Tests and Illustrations |
| simulateNumeric | Generate Artificial Data for Tests and Illustrations |
| simulatePValues | Generate Artificial Data for Tests and Illustrations |
| singlePermutation | Count Feature Overlap Under a Permutation |