Normalised Prediction Distribution Errors for Nonlinear Mixed-Effect Models

Documentation for package ‘npde’ version 3.5

DESCRIPTION file.

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A C D G K N P R S T V W misc

npde-package

Normalised prediction distribution errors for nonlinear mixed-effect models

-- A --

autonpde	Compute normalised prediction distribution errors
aux.npdeplot.boxcov	Covariate diagnostic plots
aux.npdeplot.computepi	Scatterplots and VPC
aux.npdeplot.dist	Distribution plots of pd/npde
aux.npdeplot.hist	Distribution plots of pd/npde
aux.npdeplot.meanprof	Scatterplots and VPC
aux.npdeplot.pimat	Scatterplots and VPC
aux.npdeplot.transformObs	Scatterplots and VPC
aux.npdeplot.transformPI	Scatterplots and VPC

-- C --

calcnpde.sim	Compute distribution of pd/npde using simulations
check.control.options	Set options for an NpdeObject
compute.bands	Scatterplots and VPC
compute.bands.true	Scatterplots and VPC
computenpde.loq	Method used to handle censored data
computenpde.omit	Method used to handle censored data

-- D --

decorr.chol	Decorrelation methods in npde
decorr.inverse	Decorrelation methods in npde
decorr.polar	Decorrelation methods in npde
dist.pred.sim	Compute distribution of pd/npde using simulations

-- G --

gof.test	Goodness-of-fit tests for npde
gof.test.default	Goodness-of-fit tests for npde
gof.test.NpdeObject	Goodness-of-fit tests for npde
gof.test.NpdeRes	Goodness-of-fit tests for npde
gof.test.numeric	Goodness-of-fit tests for npde

-- K --

kurtosis

Kurtosis

-- N --

npde	Compute normalised prediction distribution errors
npde.binning	Internal functions used to produce prediction intervals
npde.cens.method	Method used to handle censored data
npde.decorr.method	Decorrelation methods in npde
npde.graphs	Save the graphs for a NpdeObject object to a file
npde.graphs,NpdeObject	Class "NpdeObject"
npde.graphs-method	Save the graphs for a NpdeObject object to a file
npde.main,NpdeObject	Class "NpdeObject"
npde.plot.covariate	Covariate diagnostic plots
npde.plot.data	Plot a NpdeData object
npde.plot.default	Diagnostic plots
npde.plot.dist	Distribution plots of pd/npde
npde.plot.loq	Plot of the probability that the observations are below the LOQ
npde.plot.npd	Plots for pd and npde
npde.plot.npde	Plots for pd and npde
npde.plot.pd	Plots for pd and npde
npde.plot.scatterplot	Scatterplots and VPC
npde.plot.select	Select plot for a NpdeObject object
npde.plot.splitcov	Plots split by covariate for a NpdeObject object
npde.qqplot-method	Class "NpdeData" representing the structure of the longitudinal data
npde.save	Save the results contained in a NpdeObject object to a file
npde.save,NpdeObject	Class "NpdeObject"
npde.save-method	Save the results contained in a NpdeObject object to a file
npdeControl	Set options for an NpdeObject
NpdeData	Class "NpdeData" representing the structure of the longitudinal data
npdeData	Creates a NpdeData object
NpdeData-class	Class "NpdeData" representing the structure of the longitudinal data
NpdeObject	Class "NpdeObject"
NpdeObject-class	Class "NpdeObject"
NpdeSimData	Class "NpdeSimData" representing the structure of the longitudinal data
npdeSimData	Creates a NpdeSimData object
NpdeSimData-class	Class "NpdeSimData" representing the structure of the longitudinal data

-- P --

plot	Diagnostic plots
plot,NpdeObject	Class "NpdeObject"
plot.npde	Plots a NpdeObject object
plot.NpdeData	Plots a NpdeData object
plot.NpdeObject	Plots a NpdeObject object
plotNpde	Plots a NpdeObject object
print-method	Class "NpdeData" representing the structure of the longitudinal data
print-method	Class "NpdeObject"
print.NpdeData	Prints objects from the npde package
print.NpdeObject	Prints objects from the npde package
print.NpdeRes	Prints objects from the npde package
printgoftest	Goodness-of-fit tests for npde

-- R --

replace.control.options

Set options for an NpdeObject

-- S --

set.plotoptions	Set graphical preferences
set.plotoptions-method	Set graphical preferences
set.plotoptions.default	Set graphical preferences
set.plotoptions.NpdeData	Set graphical preferences
set.plotoptions.NpdeObject	Set graphical preferences
show	Displays npde objects
show-method	Displays npde objects
show.NpdeData	Displays npde objects
show.NpdeObject	Displays npde objects
show.NpdeRes	Displays npde objects
show.NpdeSimData	Displays npde objects
showall	Contents of an object
showall,method	Contents of an object
showall-method	Class "NpdeObject"
showall-method	Contents of an object
showall.default	Contents of an object
showall.NpdeData	Contents of an object
showall.NpdeObject	Contents of an object
showall.NpdeRes	Contents of an object
simtheopp	Simulated data for the computation of normalised prediction distribution errors in the theophylline dataset
simvirload	Simulated HIV viral loads in HIV patients
simwarfarinBase	Pharmacokinetics of warfarin
simwarfarinCov	Pharmacokinetics of warfarin
skewness	Skewness
subset.NpdeData	Subsetting a NpdeData object
subset.NpdeObject	Subsetting a NpdeData object
summary-method	Class "NpdeData" representing the structure of the longitudinal data
summary-method	Class "NpdeObject"
summary.NpdeData	Summary of a NpdeData object
summary.NpdeObject	Summary of a NpdeData object
summary.NpdeRes	Summary of a NpdeData object

-- T --

test-method	Class "NpdeObject"
theopp	Pharmacokinetics of theophylline

-- V --

virload	Simulated HIV viral loads in HIV patients
virload20	Simulated HIV viral loads in HIV patients
virload50	Simulated HIV viral loads in HIV patients
virloadMDV20	Simulated HIV viral loads in HIV patients

-- W --

warfarin

Pharmacokinetics of warfarin

-- misc --

[	Get/set methods for NpdeData object
[,NpdeSimData	Get/set methods for NpdeData object
[-method	Get/set methods for NpdeData object
[<-,NpdeSimData	Get/set methods for NpdeData object
[<--method	Get/set methods for NpdeData object