ZeBook-package |
Working with Dynamic Models for Agriculture and Environment |
AICf |
Calculate AIC, Akaike's Information Criterion |
Bean |
Bean gene-based models dataset |
carbonsoil.model |
The CarbonSoil model - calculate daily values over designated time period |
carbonsoil.update |
The CarbonSoil model - calculate change in soil carbon for one year |
carcass.define.param |
Define values of the parameters for the Carcass model |
carcass.EMI.model |
The Carcass (growth of beef cattle) model with energy as input |
carcass.EMI.model2 |
The Carcass model function for use with carcass.EMI.simule |
carcass.EMI.multi |
Wrapper function to run Carcass model on several animals with different conditions |
carcass.EMI.simule |
Wrapper function to the Carcass model for multiple sets of parameter values |
carcass.model |
The Carcass (growth of beef cattle) model |
carcass_data |
Data of growth of beef cattle for Carcass model |
carrot.weevil.model |
Carrot weevil development model |
chicks_data |
Data of growth of chicks |
cotton.model |
The Cotton model (dynamic for numbers of Cotton fruiting points). |
epirice.define.param |
Define values of the parameters for the Epirice model |
epirice.model |
The Epirice model (Disease model for rice) |
epirice.multi.simule |
Wrapper function to run Epirice multiple times (for multiple sets of inputs) |
epirice.weather |
Read weather data for Epirice (southern Asia weather) |
evaluation.criteria |
Calcule multiple goodness-of-fit criteria |
exponential.model |
The Exponential growth model of dynamic of population |
exponential.model.bis |
The Exponential growth model of dynamic of population - another form |
exponential.model.ie |
The Exponential growth model of dynamic of population - with improved Euler integration |
goodness.of.fit |
Calcule multiple goodness-of-fit criteria |
graph_epid |
Plot output of a Classical SEIR model for plant disease |
graph_epid_s |
Plot output of a Classical SEIR model for plant disease |
lactation.calf.model |
The Lactation model |
lactation.calf.model2 |
The Lactation model for use with lactation.calf.simule |
lactation.calf.simule |
Wrapper function to run the Lactation model for multiple sets of parameter values |
lactation.define.param |
Define values of the parameters for the Lactation model |
lactation.machine.model |
The Lactation model with milking machine |
lactation.machine.model2 |
The Lactation model for use with lactation.machine.simule |
magarey.define.param |
Define values of the parameters for the Magarey model |
magarey.model |
The Magarey model |
magarey.model2 |
The Magarey model, taking a vector of parameters as argument |
magarey.simule |
Wrapper function to run the Magarey model multiple times (for multiple sets of inputs) |
maize.data_EuropeEU |
maize biomass and leaf area data |
maize.data_MetaModelling |
dataset of simulation for maize final biomass |
maize.define.param |
Define values of the parameters for the Maize model |
maize.model |
The basic Maize model. |
maize.model2 |
The basic Maize model for use with maize.simule |
maize.muchow.graph |
Plot dynamic output of Muchow Maize model. |
maize.muchow.model |
Maize model, with harvest index and yield from Muchow et al. (1990) |
maize.multisy |
Wrapping function to run maize model on several site-years |
maize.multisy240 |
Wrapper function to run Maize model for multiple sets of input variables (site-year) and give Biomass at day240. |
maize.RUEtemp |
Calculate effect of temperature on RUE for Maize |
maize.simule |
Wrapper function to run Maize model for multiple sets of parameter values |
maize.simule240 |
Wrapper function to run Maize model multiple times for multiple sets of parameter values and give Biomass at day240 |
maize.simule_multisy240 |
Wrapper function to run Maize model for multiple sets of parameter values (virtual design) and multiple sets of input variables (site-year) and give Biomass at day240 |
maize.weather |
Read weather data for the Maize model |
maize_cir.model |
The Maize model with additional state variable CumInt |
maize_cir_rue.model |
The Maize model with temperature dependent RUE and CumInt |
maize_cir_rue_ear.model |
The Maize model with temperature dependent RUE, CumInt and ear growth |
mm.A.fct |
Expanded leaf area function for Muchow et al. (1990) Maize model |
mm.FAS.fct |
Senescence function for Muchow et al. (1990) Maize model |
mm.HI.fct |
Harvest index function for Muchow et al. (1990) Maize model |
mm.LN.fct |
Leaf number function for Muchow et al. (1990) Maize model |
param.rtriangle |
Generate a random plan as a data frame. Columns are parameters. Values have triangle distribution |
param.runif |
Generate a random plan as a data frame. Columns are parameters. Values have uniform distribution |
population.age.matrix.model |
The PopulationAge model (Population Dynamics with Age Classes) - matrix form |
population.age.model |
The PopulationAge model (Population Dynamics with Age Classes) |
population.age.model.ode |
The PopulationAge model (Population Dynamics with Age Classes) - ode form |
predator.prey.model |
The PredatorPrey model (Predator-Prey Lotka-Volterra with logistic equation for prey) |
q.arg.fast.runif |
Build the q.arg argument for the FAST function (sensitivity analysis) |
seedweight.data |
Wheat grain weight measurements after anthesis |
seedweight.model |
The SeedWeight model |
Sunflower_Phomopsis |
Phomopsis stem canker observations for Sunflower |
threshold.measures |
Computation of threshold.measures |
verhulst.model |
The Verhulst (logistic) model - calculate daily values over designated time period |
verhulst.update |
The Verhulst (logistic) model - calculate change for one day |
watbal.define.param |
Define values of the parameters for the WaterBalance model |
watbal.model |
WaterBalance model - calculate soil water over designated time period |
watbal.model.arid |
WaterBalance model - Variant with another order of calculation and ARID index |
watbal.simobsdata |
Soil water content measurements and associated simulations with WaterBalance model |
watbal.update |
WaterBalance model - calculate change in soil water for one day |
watbal.weather |
Read weather data for the WaterBalance model (West of France Weather) |
weather_EuropeEU |
Weather serie for Europe EU from NASA POWER agroclimatology |
weather_FranceWest |
Weather series for western France from NASA POWER agroclimatology |
weather_GNS |
Weather series for Gainesville (FL, USA) years 1982 and 1983 |
weather_SouthAsia |
Weather series for southern Asia from NASA POWER agroclimatology |
weed.define.param |
Define parameter values of the Weed model |
weed.model |
The Weed model - calculate daily values over designated time period |
weed.simule |
Wrapper function to run the Weed model multiple times (for multiple sets of inputs) |
weed.update |
The Weed model - calculate change for one year |
WheatYieldGreece |
National Wheat Yield evolution for Greece from FAO |
Wheat_GPC |
Grain Protein Contents in Wheat Grains |
zakoks.original.model |
Classical SEIR model for plant diseases from Zadoks (1971) |
ZeBook |
Working with Dynamic Models for Agriculture and Environment |