Basic Functions for Pre-Processing Microarrays

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Documentation for package ‘PreProcess’ version 3.1.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

analyze	Methods "process" and "analyze"
analyze-method	Methods "process" and "analyze"
analyze-method	Class "CompleteChannel"
as.data.frame-method	Class "CompleteChannel"
Channel	Class "Channel"
Channel-class	Class "Channel"
channelize	Method "channelize"
channelize-method	Class "CompleteChannel"
channelize-method	Method "channelize"
ChannelType	Class "ChannelType"
ChannelType-class	Class "ChannelType"
CompleteChannel	Class "CompleteChannel"
CompleteChannel-class	Class "CompleteChannel"
ellipse	OOMPA graphical utility functions
f.above.thresh	OOMPA Statistical Utility Functions
f.cord	OOMPA Statistical Utility Functions
f.oneway.rankings	OOMPA Statistical Utility Functions
f.qq	OOMPA graphical utility functions
f.qt	OOMPA graphical utility functions
fliplr	OOMPA Matrix Utility Functions
flipud	OOMPA Matrix Utility Functions
getDesign	Class "ChannelType"
hist-method	Class "Channel"
image-method	Class "Channel"
image-method	Class "CompleteChannel"
makeDefaultPipeline	Class "Pipeline"
Pipeline	Class "Pipeline"
Pipeline-class	Class "Pipeline"
PIPELINE.MDACC.DEFAULT	Class "Pipeline"
PIPELINE.STANDARD	Class "Pipeline"
plot-method	Class "Channel"
plot-method	Class "CompleteChannel"
print-method	Class "ChannelType"
print-method	Class "Channel"
print-method	Class "CompleteChannel"
PROC.BACKGROUND	Class "CompleteChannel"
PROC.CORRECTED.SIGNAL	Class "CompleteChannel"
PROC.GLOBAL.NORMALIZATION	Class "Processor"
PROC.LOG.TRANSFORM	Class "Processor"
PROC.MEDIAN.EXPRESSED.NORMALIZATION	Class "Processor"
PROC.NEG.CORRECTED.SIGNAL	Class "CompleteChannel"
PROC.SD.SIGNAL	Class "CompleteChannel"
PROC.SIGNAL	Class "CompleteChannel"
PROC.SIGNAL.TO.NOISE	Class "CompleteChannel"
PROC.SUBSET.MEAN.NORMALIZATION	Class "Processor"
PROC.SUBSET.NORMALIZATION	Class "Processor"
PROC.SUBTRACTOR	Class "Processor"
PROC.THRESHOLD	Class "Processor"
process	Methods "process" and "analyze"
process-method	Methods "process" and "analyze"
process-method	Class "Processor"
process-method	Class "Pipeline"
process-method	Class "CompleteChannel"
Processor	Class "Processor"
Processor-class	Class "Processor"
setDesign	Class "ChannelType"
show-method	Class "ChannelType"
show-method	Class "Channel"
show-method	Class "CompleteChannel"
summary-method	Class "ChannelType"
summary-method	Class "Channel"
summary-method	Class "Processor"
summary-method	Class "Pipeline"
summary-method	Class "CompleteChannel"