Quantification of Mitochondrial DNA Heteroplasmy
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘MitoHEAR’ version 0.1.0
Help Pages
| choose_features_clustering | choose_features_clustering |
| clustering_angular_distance | clustering_angular_distance |
| detect_insertion | detect_insertion |
| dpt_test | dpt_test |
| filter_bases | filter_bases |
| get_distribution | get_distribution |
| get_heteroplasmy | get_heteroplasmy |
| get_raw_counts_allele | get_raw_counts_allele |
| get_wilcox_test | get_wilcox_test |
| plot_allele_frequency | plot_allele_frequency |
| plot_base_coverage | plot_base_coverage |
| plot_batch | plot_batch |
| plot_cells_coverage | plot_cells_coverage |
| plot_condition | plot_condition |
| plot_coordinate_cluster | plot_coordinate_cluster |
| plot_coordinate_heteroplasmy | plot_coordinate_heteroplasmy |
| plot_correlation_bases | plot_correlation_bases |
| plot_distance_matrix | plot_distance_matrix |
| plot_distribution | plot_distribution |
| plot_dpt | plot_dpt |
| plot_genome_coverage | plot_genome_coverage |
| plot_heatmap | plot_heatmap |
| plot_heteroplasmy | plot_heteroplasmy |
| plot_heteroplasmy_variability | plot_heteroplasmy_variability |
| plot_spider_chart | plot_spider_chart |
| vi_comparison | vi_comparison We compute the variation of information (VI) between the partition provided by _new_classification_ and _old_classification_. The VI between a random partitions (obtained with re-shuffle from original labels in _old_classification_) and _old_classification_ is also computed. A distribution of VI values from random partitions is built. Finally, from the comparison with this distribution, an empirical p value is given to the VI of the unsupervised cluster analysis. |