bind_to_function |
Encloses argument in a function's environment |
cases_pal |
Color palettes used in outbreaker |
chains_pal |
Color palettes used in outbreaker |
create_config |
Set and check parameter settings of outbreaker |
create_param |
Initializes outputs for outbreaker |
custom_likelihoods |
Customise likelihood functions for outbreaker |
custom_moves |
Customise samplers for outbreaker |
custom_priors |
Customise priors for outbreaker |
fake_outbreak |
Small simulated outbreak |
get_cpp_api |
Access internal C++ rountines used in outbreaker2 |
outbreaker |
outbreaker2: main function for reconstructing disease outbreaks |
outbreaker_chains |
Basic methods for processing outbreaker results |
outbreaker_data |
Process input data for outbreaker |
outbreaker_package |
outbreaker2: a platform for disease outbreak reconstruction |
outbreaker_palettes |
Color palettes used in outbreaker |
outbreaker_param |
Initializes outputs for outbreaker |
outbreaker_store |
Initializes outputs for outbreaker |
plot.outbreaker_chains |
Basic methods for processing outbreaker results |
print.custom_likelihoods |
Customise likelihood functions for outbreaker |
print.custom_priors |
Customise priors for outbreaker |
print.outbreaker_chains |
Basic methods for processing outbreaker results |
print.outbreaker_config |
Set and check parameter settings of outbreaker |
print.outbreaker_moves |
Customise samplers for outbreaker |
sim_ctd |
Simulate contact data from a transmission tree |
summary.outbreaker_chains |
Basic methods for processing outbreaker results |