as.conflictmat |
convert to a matrix of 'conf.mat' class |
bradleyTerry |
Computes the MLE for the BT model using an MM algorithm |
bt.test |
Systemic test for the assumptions of the Bradley-Terry model |
conductance |
compute win-loss probabilities |
countPaths |
count paths between all pairs |
dyadicLongConverter |
dyadic long format converter |
findAllPaths |
Identifies all paths between all pairs of less than or equal to a certain length |
findIDpaths |
find all paths of a certain length for an individual |
getAllCosts |
Associate each costs with its corresponding simulated annealing runs |
getAllRankOrder |
assign IDs to all best rank orders |
getBestRankOrder |
assign IDs to the best rank order |
getSimOutput |
get useful outputs from simulated annealing processes |
individualDomProb |
individual-level probability converter |
Perc |
Perc. |
plotConfmat |
generate heat map for a matrix |
plotProbDiagnosis |
Diagnosis Plot 'plotProbDiagnosis' generate heat map for dominance probability matrix |
sampleEdgelist |
sampleEdgelist. social interactions among 11 monkeys |
sampleRawMatrix |
sampleRawMatrix. dominance interactions between 39 monkeys |
sampleWeightedEdgelist |
sampleWeightedEdgelist. dominance interactions among 29 monkeys |
simRankOrder |
Find rank order using simulated annealing |
transitivity |
calculate transitivity measurements for a matrix |
valueConverter |
win-loss probability matrix value converter |