Density-Weighted Proportion

Documentation for package ‘dwp’ version 1.1

DESCRIPTION file.

Help Pages

-- A --

Acins	Calculate Area of Intersection inside Circle and Square with Common Center
addCarcass	Add Carcasses to a Site Layout
addCarcass.data.frame	Add Carcasses to a Site Layout
addCarcass.shapeCarcass	Add Carcasses to a Site Layout
aic	Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.dd	Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.ddArray	Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.ddArraycc	Calculate Akaike Information Criterion (AICc) for Distance Distributions
alt_names	Names of the Named Distributions

-- C --

calcMstar	Calculate posterior distribution of M and extract statistics (M* and CI)
carcass_polygon	Example Carcass Distances to Accompany the Polygon Layout Data Set
carcass_simple	Carcass Data to Accompany the Simple Geometry Data Format
carcass_simple0	Full, Simulated carcass_simple Data Set (Including Locations and Missed Carcasses)
cof2parms	Convert GLM Coefficients into Named Distribution Parameters
cof2parms.dd	Convert GLM Coefficients into Named Distribution Parameters
cof2parms.matrix	Convert GLM Coefficients into Named Distribution Parameters
cof2parms.numeric	Convert GLM Coefficients into Named Distribution Parameters
cofOK	Check Whether GLM Coefficients Give Proper Distribution
cofOK0	Check Whether GLM Coefficients Give Proper Distribution
cofOKInf	Check Whether GLM Coefficients Give Proper Distribution
cof_name	Names of the GLM Coefficients for Each Distribution
constraints	Constraints on GLM Coefficients for Extensibility to a Distribution
constraints_par	Constraints on Parameters to Assure Extensibility

-- D --

dd2ddSim	Extract Parameters from a Distance Model ('dd') and Format as 'ddSim' Object
ddCI	Calculate CI for CDF, PDF, or quantile
ddd	Calculate Probability Functions for Distance Distributions
ddFit	Fit Distance Distribution Model(s)
ddFit.data.frame	Fit Distance Distribution Model(s)
ddFit.list	Fit Distance Distribution Model(s)
ddFit.rings	Fit Distance Distribution Model(s)
ddFit.ringscc	Fit Distance Distribution Model(s)
ddFit.xyLayout	Fit Distance Distribution Model(s)
ddPrint	Print S3 Objects in 'dwp' Package
ddSim	Simulation of Dispersion Parameters
ddSim.dd	Simulation of Dispersion Parameters
degOrder	An Ordering of the Models by Degree of the Polynomial
Distributions	Probability Distributions for Carcasses Versus Distance from Turbine
distr_names	Full List of Names of Distributions
dmb	Probability Distributions for Carcasses Versus Distance from Turbine
dwp	Density-Weighted Proportion
dxep0	Probability Distributions for Carcasses Versus Distance from Turbine
dxep012	Probability Distributions for Carcasses Versus Distance from Turbine
dxep0123	Probability Distributions for Carcasses Versus Distance from Turbine
dxep02	Probability Distributions for Carcasses Versus Distance from Turbine
dxep1	Probability Distributions for Carcasses Versus Distance from Turbine
dxep12	Probability Distributions for Carcasses Versus Distance from Turbine
dxep123	Probability Distributions for Carcasses Versus Distance from Turbine
dxep2	Probability Distributions for Carcasses Versus Distance from Turbine
dxepi0	Probability Distributions for Carcasses Versus Distance from Turbine

-- E --

estdwp	Estimate DWP
estdwp.psiHat	Estimate DWP
estdwp.psiHatcc	Estimate DWP
estpsi	Estimate Probability Carcass lands in Searched Area
estpsi.data.frame	Estimate Probability Carcass lands in Searched Area
estpsi.rdat	Estimate Probability Carcass lands in Searched Area
estpsi.rings	Estimate Probability Carcass lands in Searched Area
estpsi.ringscc	Estimate Probability Carcass lands in Searched Area
estpsi.rpA	Estimate Probability Carcass lands in Searched Area
estpsi.xyLayout	Estimate Probability Carcass lands in Searched Area
exclude	Remove Particular Names from a Longer List
exportGenEst	Export Estimated Density-Weighted Proportion to File in Proper GenEst Format

-- F --

fmmax	Find suitable mmax for clipping improper priors for M
fmmax.ab	Find suitable mmax for clipping improper priors for M
formatGenEst	Format DWP Estimate for Use in GenEst

-- G --

getncarc	Simple Function to Extract Carcass Counts
getncarc.dd	Simple Function to Extract Carcass Counts
getncarc.ddArray	Simple Function to Extract Carcass Counts
getncarc.ddArraycc	Simple Function to Extract Carcass Counts
getncarc.rings	Simple Function to Extract Carcass Counts
getncarc.ringscc	Simple Function to Extract Carcass Counts
getncarc.xyLayout	Simple Function to Extract Carcass Counts

-- I --

incGamma	Incomplete Gamma Function
initLayout	Create a Data Structure or Map for the Site Layout

-- L --

layout_eagle	Example Bare Vector Format for Eagle Data
layout_polygon	Example Polygon Data for Site Layout
layout_simple	Example Simple Geometry Data Format for Site Layout
layout_xy	Example Data for Site Layout on an (x, y) Grid

-- M --

MCI	Calculate posterior distribution of M and extract statistics (M* and CI)
modelFilter	Run Models through a Sieve to Filter out Dubious Fits
mod_all	Names of All the Available Models
mod_color	Vector of Colors Used in Graphs of Fitted Models
mod_lty	Vector of Line Types Used in Graphs of Fitted Models
mod_offset	Vector of GLM Offsets for Available Models
mod_standard	Vector of Names of Standard Models
mod_xy	Vector of Names of Models Available for Grid Layout
mpp2ddSim	Convert Distribution Name + Parameters to 'ddSim' Object
MpriorOK	Check validity of format of custom prior for M

-- N --

natural

Vector of Names of Models with Natural Offset

-- O --

off	Utility Function for Constructing Offsets for GLMs

-- P --

parms2cof.matrix	Convert GLM Coefficients into Named Distribution Parameters
parm_name	List of Names of the Distribution Parameters Associated with Respective Models
parOK	Check Parameter Value Validity the Distribution
par_default	Default Graphics Parameters
pdd	Calculate Probability Functions for Distance Distributions
Plot	Plot dd and ddArray Objects
plot.dd	Plot dd and ddArray Objects
plot.ddArray	Plot dd and ddArray Objects
plot.dwphat	Plot dd and ddArray Objects
plot.fmod	Plot dd and ddArray Objects
plot.layoutSimple	Plot dd and ddArray Objects
plot.polygonLayout	Plot dd and ddArray Objects
plot.psiHat	Plot dd and ddArray Objects
pmb	Probability Distributions for Carcasses Versus Distance from Turbine
postM	Calculate posterior distribution of M and extract statistics (M* and CI)
postM.ab	Calculate posterior distribution of M and extract statistics (M* and CI)
prepmod	Internal Utility Function to Parse and Format Model for Calculating Psihat
prepRing	Format a Search Layout into Rings for Analysis
prepRing.numeric	Format a Search Layout into Rings for Analysis
prepRing.polygonLayout	Format a Search Layout into Rings for Analysis
prepRing.shapeLayout	Format a Search Layout into Rings for Analysis
prepRing.simpleLayout	Format a Search Layout into Rings for Analysis
print.dd	Print S3 Objects in 'dwp' Package
print.ddArray	Print S3 Objects in 'dwp' Package
print.fmod	Print S3 Objects in 'dwp' Package
psi_extend	Simple Extension of a 'dd' Model beyond the Search Radius
pxep0	Probability Distributions for Carcasses Versus Distance from Turbine
pxep012	Probability Distributions for Carcasses Versus Distance from Turbine
pxep0123	Probability Distributions for Carcasses Versus Distance from Turbine
pxep02	Probability Distributions for Carcasses Versus Distance from Turbine
pxep1	Probability Distributions for Carcasses Versus Distance from Turbine
pxep12	Probability Distributions for Carcasses Versus Distance from Turbine
pxep123	Probability Distributions for Carcasses Versus Distance from Turbine
pxep2	Probability Distributions for Carcasses Versus Distance from Turbine
pxepi0	Probability Distributions for Carcasses Versus Distance from Turbine

-- Q --

qdd	Calculate Probability Functions for Distance Distributions

-- R --

rcd	Calculate Probability Functions for Distance Distributions
rdd	Calculate Probability Functions for Distance Distributions
readCarcass	Import Carcass Observations Locations from Shape Files
rmat	Simple Utility Function Used in Optimizing the GLM

-- S --

sieve_default	Test Criteria for Model Selection
sieve_win	Test Criteria for Model Selection within Search Area
stats	Display a Tables of Summary Statistics for Distance Distributions
stats.dd	Display a Tables of Summary Statistics for Distance Distributions
stats.ddArray	Display a Tables of Summary Statistics for Distance Distributions
stats.ddArraycc	Display a Tables of Summary Statistics for Distance Distributions
subset.shapeCarcass	Subset Data from an Imported and Formatted Shape File
subset.shapeLayout	Subset Data from an Imported and Formatted Shape File

-- X --

xyr	Locations of All Carcasses in Grid Data

-- misc --

[.ddArray	Subset a Set of Fitted Dispersion Models ('ddArray')
[.ddSim	Subset Simulated Dispersion Parameters while Preserving Attributes