Density-Weighted Proportion


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Documentation for package ‘dwp’ version 1.0

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A C D E F G I L M N O P Q R S X misc

-- A --

Acins Calculate Area of Intersection inside Circle and Square with Common Center
addCarcass Add Carcasses to a Site Layout
addCarcass.data.frame Add Carcasses to a Site Layout
addCarcass.shapeCarcass Add Carcasses to a Site Layout
aic Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.dd Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.ddArray Calculate Akaike Information Criterion (AICc) for Distance Distributions
aic.ddArraycc Calculate Akaike Information Criterion (AICc) for Distance Distributions
alt_names Names of the Named Distributions

-- C --

calcMstar Calculate posterior distribution of M and extract statistics (M* and CI)
carcass_polygon Example Carcass Distances to Accompany the Polygon Layout Data Set
carcass_simple Carcass Data to Accompany the Simple Geometry Data Format
carcass_simple0 Full, Simulated carcass_simple Data Set (Including Locations and Missed Carcasses)
cof2parms Convert GLM Coefficients into Named Distribution Parameters
cof2parms.dd Convert GLM Coefficients into Named Distribution Parameters
cof2parms.matrix Convert GLM Coefficients into Named Distribution Parameters
cof2parms.numeric Convert GLM Coefficients into Named Distribution Parameters
cofOK Check Whether GLM Coefficients Give Proper Distribution
cofOK0 Check Whether GLM Coefficients Give Proper Distribution
cofOKInf Check Whether GLM Coefficients Give Proper Distribution
cof_name Names of the GLM Coefficients for Each Distribution
constraints Constraints on GLM Coefficients for Extensibility to a Distribution
constraints_par Constraints on Parameters to Assure Extensibility

-- D --

dd2ddSim Extract Parameters from a Distance Model ('dd') and Format as 'ddSim' Object
ddCI Calculate CI for CDF, PDF, or quantile
ddd Calculate Probability Functions for Distance Distributions
ddFit Fit Distance Distribution Model(s)
ddFit.data.frame Fit Distance Distribution Model(s)
ddFit.list Fit Distance Distribution Model(s)
ddFit.rings Fit Distance Distribution Model(s)
ddFit.ringscc Fit Distance Distribution Model(s)
ddFit.xyLayout Fit Distance Distribution Model(s)
ddPrint Print S3 Objects in 'dwp' Package
ddSim Simulation of Dispersion Parameters
ddSim.dd Simulation of Dispersion Parameters
degOrder An Ordering of the Models by Degree of the Polynomial
Distributions Probability Distributions for Carcasses Versus Distance from Turbine
distr_names Full List of Names of Distributions
dmb Probability Distributions for Carcasses Versus Distance from Turbine
dwp Density-Weighted Proportion
dxep0 Probability Distributions for Carcasses Versus Distance from Turbine
dxep012 Probability Distributions for Carcasses Versus Distance from Turbine
dxep0123 Probability Distributions for Carcasses Versus Distance from Turbine
dxep02 Probability Distributions for Carcasses Versus Distance from Turbine
dxep1 Probability Distributions for Carcasses Versus Distance from Turbine
dxep12 Probability Distributions for Carcasses Versus Distance from Turbine
dxep123 Probability Distributions for Carcasses Versus Distance from Turbine
dxep2 Probability Distributions for Carcasses Versus Distance from Turbine
dxepi0 Probability Distributions for Carcasses Versus Distance from Turbine

-- E --

estdwp Estimate DWP
estdwp.psiHat Estimate DWP
estdwp.psiHatcc Estimate DWP
estpsi Estimate Probability Carcass lands in Searched Area
estpsi.data.frame Estimate Probability Carcass lands in Searched Area
estpsi.rdat Estimate Probability Carcass lands in Searched Area
estpsi.rings Estimate Probability Carcass lands in Searched Area
estpsi.ringscc Estimate Probability Carcass lands in Searched Area
estpsi.rpA Estimate Probability Carcass lands in Searched Area
estpsi.xyLayout Estimate Probability Carcass lands in Searched Area
exclude Remove Particular Names from a Longer List
exportGenEst Export Estimated Density-Weighted Proportion to File in Proper GenEst Format

-- F --

fmmax Find suitable mmax for clipping improper priors for M
fmmax.ab Find suitable mmax for clipping improper priors for M
formatGenEst Format DWP Estimate for Use in GenEst

-- G --

getncarc Simple Function to Extract Carcass Counts
getncarc.dd Simple Function to Extract Carcass Counts
getncarc.ddArray Simple Function to Extract Carcass Counts
getncarc.ddArraycc Simple Function to Extract Carcass Counts
getncarc.rings Simple Function to Extract Carcass Counts
getncarc.ringscc Simple Function to Extract Carcass Counts
getncarc.xyLayout Simple Function to Extract Carcass Counts

-- I --

incGamma Incomplete Gamma Function
initLayout Create a Data Structure or Map for the Site Layout

-- L --

layout_eagle Example Bare Vector Format for Eagle Data
layout_polygon Example Polygon Data for Site Layout
layout_simple Example Simple Geometry Data Format for Site Layout
layout_xy Example Data for Site Layout on an (x, y) Grid

-- M --

MCI Calculate posterior distribution of M and extract statistics (M* and CI)
modelFilter Run Models through a Sieve to Filter out Dubious Fits
mod_all Names of All the Available Models
mod_color Vector of Colors Used in Graphs of Fitted Models
mod_lty Vector of Line Types Used in Graphs of Fitted Models
mod_offset Vector of GLM Offsets for Available Models
mod_standard Vector of Names of Standard Models
mod_xy Vector of Names of Models Available for Grid Layout
mpp2ddSim Convert Distribution Name + Parameters to 'ddSim' Object
MpriorOK Check validity of format of custom prior for M

-- N --

natural Vector of Names of Models with Natural Offset

-- O --

off Utility Function for Constructing Offsets for GLMs

-- P --

parms2cof.matrix Convert GLM Coefficients into Named Distribution Parameters
parm_name List of Names of the Distribution Parameters Associated with Respective Models
parOK Check Parameter Value Validity the Distribution
par_default Default Graphics Parameters
pdd Calculate Probability Functions for Distance Distributions
Plot Plot dd and ddArray Objects
plot.dd Plot dd and ddArray Objects
plot.ddArray Plot dd and ddArray Objects
plot.dwphat Plot dd and ddArray Objects
plot.fmod Plot dd and ddArray Objects
plot.layoutSimple Plot dd and ddArray Objects
plot.polygonLayout Plot dd and ddArray Objects
plot.psiHat Plot dd and ddArray Objects
pmb Probability Distributions for Carcasses Versus Distance from Turbine
postM Calculate posterior distribution of M and extract statistics (M* and CI)
postM.ab Calculate posterior distribution of M and extract statistics (M* and CI)
prepmod Internal Utility Function to Parse and Format Model for Calculating Psihat
prepRing Format a Search Layout into Rings for Analysis
prepRing.numeric Format a Search Layout into Rings for Analysis
prepRing.polygonLayout Format a Search Layout into Rings for Analysis
prepRing.shapeLayout Format a Search Layout into Rings for Analysis
prepRing.simpleLayout Format a Search Layout into Rings for Analysis
print.dd Print S3 Objects in 'dwp' Package
print.ddArray Print S3 Objects in 'dwp' Package
print.fmod Print S3 Objects in 'dwp' Package
psi_extend Simple Extension of a 'dd' Model beyond the Search Radius
pxep0 Probability Distributions for Carcasses Versus Distance from Turbine
pxep012 Probability Distributions for Carcasses Versus Distance from Turbine
pxep0123 Probability Distributions for Carcasses Versus Distance from Turbine
pxep02 Probability Distributions for Carcasses Versus Distance from Turbine
pxep1 Probability Distributions for Carcasses Versus Distance from Turbine
pxep12 Probability Distributions for Carcasses Versus Distance from Turbine
pxep123 Probability Distributions for Carcasses Versus Distance from Turbine
pxep2 Probability Distributions for Carcasses Versus Distance from Turbine
pxepi0 Probability Distributions for Carcasses Versus Distance from Turbine

-- Q --

qdd Calculate Probability Functions for Distance Distributions

-- R --

rcd Calculate Probability Functions for Distance Distributions
rdd Calculate Probability Functions for Distance Distributions
readCarcass Import Carcass Observations Locations from Shape Files
rmat Simple Utility Function Used in Optimizing the GLM

-- S --

sieve_default Test Criteria for Model Selection
sieve_win Test Criteria for Model Selection within Search Area
stats Display a Tables of Summary Statistics for Distance Distributions
stats.dd Display a Tables of Summary Statistics for Distance Distributions
stats.ddArray Display a Tables of Summary Statistics for Distance Distributions
stats.ddArraycc Display a Tables of Summary Statistics for Distance Distributions
subset.shapeCarcass Subset Data from an Imported and Formatted Shape File
subset.shapeLayout Subset Data from an Imported and Formatted Shape File

-- X --

xyr Locations of All Carcasses in Grid Data

-- misc --

[.ddArray Subset a Set of Fitted Dispersion Models ('ddArray')
[.ddSim Subset Simulated Dispersion Parameters while Preserving Attributes