Exploratory Analyses for the Phylogenetic Comparative Method


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Documentation for package ‘adephylo’ version 1.1-11

Help Pages

adephylo-package The adephylo package
.tipToRoot Low-level auxiliary functions for adephylo
abouheif.moran Abouheif's test based on Moran's I
adephylo The adephylo package
bullseye Fan-like phylogeny with possible representation of traits on tips
carni19 Phylogeny and quantative trait of carnivora
carni70 Phylogeny and quantitative traits of carnivora
dibas DIstance-Based Assignment
dibas.dist DIstance-Based Assignment
dibas.matrix DIstance-Based Assignment
dibas.phylo DIstance-Based Assignment
dibas.vector DIstance-Based Assignment
distRoot Compute the distance of tips to the root
distTips Compute some phylogenetic distance between tips
listDD List direct descendants for all nodes of a tree
listTips List tips descendings from all nodes of a tree
lizards Phylogeny and quantitative traits of lizards
maples Phylogeny and quantitative traits of flowers
me.phylo Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix
mjrochet Phylogeny and quantitative traits of teleos fishes
moran.idx Computes Moran's index for a variable
orthobasis.phylo Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix
orthogram Orthonormal decomposition of variance
palm Phylogenetic and quantitative traits of amazonian palm trees
plot.ppca Phylogenetic principal component analysis
ppca Phylogenetic principal component analysis
print.ppca Phylogenetic principal component analysis
procella Phylogeny and quantitative traits of birds
proxTips Compute some phylogenetic proximities between tips
scatter.ppca Phylogenetic principal component analysis
screeplot.ppca Phylogenetic principal component analysis
simDatGroups DIstance-Based Assignment
sp.tips Find the shortest path between tips of a tree
summary.ppca Phylogenetic principal component analysis
table.phylo4d Graphical display of phylogeny and traits
tithonia Phylogeny and quantitative traits of flowers
treePart Define partitions of tips according from a tree
ungulates Phylogeny and quantitative traits of ungulates.