treestartr-package |
treestartr: A package for generating reasonable starting trees for phylogenetic analysis. |
absent_list |
bears |
absent_tippr |
Add tips to tree via user input |
bears |
bears |
dataf_parsr |
Detect file format of taxon file |
echo_rb |
Print RevBayes-formatted clade constriants. |
echo_subtree |
Print subtrees with tips added. |
fileformat |
Utility function to check if file is a csv or tsv. |
genera_strippr |
Check if tip is on tree |
get_found |
Get dataframe of tips that do not have congeners on tree. |
get_lost |
Determine if a tip is present on a tree |
make_absentdf |
Determine which tips are not on the tree, and get their genera. |
make_treedf |
Determine which tips are on the tree, and get their genera. |
mrca_df |
bears |
present_tippr |
Add tips to the tree based on taxonomy. |
rand_absent_tippr |
Random addition of taxa |
taxon_testr |
Utility function to check taxon_names in parsed data file |
tax_frame |
bears |
text_placr |
Add tips to tree via taxon list |
tree |
bears |
treestartr |
treestartr: A package for generating reasonable starting trees for phylogenetic analysis. |