Nominating Quality Control Outliers in Genomic Profiling Studies

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Documentation for package ‘OmicsQC’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

accumulate.zscores	Sum across sign corrected z-scores for total sample quality score
correct.zscore.signs	Corrects the z-scores signs according to the metrics
cosine.similarity.cutoff	Calculate an outlier cutoff using cosine similarity
cosine.similarity.iterative	Tests the accumulated quality scores for outliers using cosine similarity
example.qc.dataframe	QC metrics across 100 samples
fit.and.evaluate	Fits the QC data to distributions and returns the KS test result and BIC score
get.qc.barplot	Generates the standard barplot of scores for each sample
get.qc.heatmap	Generates the standard heatmap of scores for each sample.
get.qc.multipanelplot	Generates the multipanel plot of heatmap and barplot
sign.correction	Directionality of QC metrics
ylabels	Formatted QC metrics labels
zscores.from.metrics	Calculate z-scores for each metric across each sample