GoodFibes-package |
Detection and Reconstruction of Muscle Fibers from diceCT Image Data |
ant.final |
Ant muscle fibers finalized |
ant.raw |
Raw ant muscle fibers |
check.overlap |
Check if muscle fibers are redundant |
color.scale |
A simple wrapper to create colors for a continuous variable |
crop.stack |
Automated imaging cropping |
equalize.stack |
Automated histogram equalization of image state |
fiber.angle |
*Experimental!* Calculating the orientation of muscle fibers |
fiber.curve |
Calculate the relative curvature of muscle fibers |
fiber.lengths |
Calculated the length of smoothed muscle fibers |
fibers.smoothed |
Smoothing of estimated fiber paths |
fuse.fibers |
Fuse incomplete fibers |
fuse.fibers.auto |
Automated repeated fusing of fiber paths |
good.fibes |
Automated detection of muscle fibers from diceCT scans |
GoodFibes |
Detection and Reconstruction of Muscle Fibers from diceCT Image Data |
muscle.plot |
Plot a single muscle fiber |
muscle.plot.multi |
Plot multi muscle fibers with a muscle outline |
muscle.plot.stl |
Plot and export muscle fibers to stl |
pointsGenerator |
Line points generator |
quality.check |
Quality testing of possible muscle fibers detected by good.fibes |
sequencePlot |
Plot the path of a muscle fiber generated using good.fibes |
thresholdPlot |
Plot image from diceCT stack using thresholding |