localScore-package |
Package for sequence analysis by local score |
Aeso |
Congenital oesophageal atresia data |
aeso.data |
Deprecated. Use 'Aeso' instead. |
automatic_analysis |
Automatic analysis |
CharSequence2ScoreSequence |
Convert a character sequence into a score sequence |
CharSequences2ScoreSequences |
Convert several character sequences into score sequences |
daudin |
Daudin [p-value] [iid] |
dico |
Deprecated. Use 'HydroScore' instead. |
exact_mc |
Exact method for p-value [Markov chains] |
HydroScore |
Dictionnaire |
karlin |
Karlin [p-value] [iid] |
karlinMonteCarlo |
Monte Carlo - Karlin [p-value] |
karlinMonteCarlo_double |
Monte Carlo - Karlin for real scores[p-value] |
lindley |
Lindley process |
loadMatrixFromFile |
Loads matrix from csv-File |
loadScoreFromFile |
Load score from file |
localScore |
Package for sequence analysis by local score |
localScoreC |
Local score |
localScoreC_double |
Local score for sequences of floating values |
LongSeq |
Deprecated. Use 'Seq1093' instead. |
maxPartialSumd |
Maximum of the partial sum [probability] [iid] |
mcc |
MCC [p-value] [iid] |
MidSeq |
Deprecated. Use 'Seq219' instead. |
monteCarlo |
Monte Carlo method [p-value] |
monteCarlo_double |
Monte Carlo method for real score case [p-value] |
MySeqList |
Deprecated. Use 'SeqListSCOPe' instead. |
RealScores2IntegerScores |
Convert a real scores vector into an integer scores vector |
scoreDictionnary2probabilityVector |
Check for missing scores values in the score distribution |
scoreSequences2probabilityVector |
Empirical distribution from sequences |
Seq1093 |
Long protein sequence |
Seq219 |
Protein sequence |
Seq31 |
Short protein sequence |
SeqListSCOPe |
Several sequences |
sequences2transmatrix |
Transition matrix from sequence(s) |
ShortSeq |
Deprecated. Use 'Seq31' instead. |
SJSyndrome.data |
Stevens-Johnson syndrome data |
stationary_distribution |
Stationary distribution [Markov chains] |
transmatrix2sequence |
Sampling function for Markov chains |