SCIntRuler-package |
SCIntRuler: Integration of Single-Cell RNA-seq Datasets |
CalcuSCIR |
Calculate SCIntRuler |
crossdist |
Cross-Distance Matrix Calculation |
FindCell |
Find cells indicating shared biological features across conditions |
FindNNDist |
Find the nearest neighbors |
FindNNDistC |
Find the nearest neighbors |
GetCluster |
Get broad and fine clusters |
NormData |
Normalized RNA data matrix |
PermTest |
Permutation Test |
PlotSCIR |
Plot SCIntRuler |
SCEtoSeurat |
Input and Split SingleCellExperiment Data |
SCIntRuler |
SCIntRuler: Integration of Single-Cell RNA-seq Datasets |
sim_data_sce |
My Example Dataset |
sim_result |
My Example Dataset |
SummCluster |
Get maximum number of broad clusters |