Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets

---

Documentation for package ‘SCIntRuler’ version 0.99.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

SCIntRuler-package	SCIntRuler: Integration of Single-Cell RNA-seq Datasets
CalcuSCIR	Calculate SCIntRuler
crossdist	Cross-Distance Matrix Calculation
FindCell	Find cells indicating shared biological features across conditions
FindNNDist	Find the nearest neighbors
FindNNDistC	Find the nearest neighbors
GetCluster	Get broad and fine clusters
NormData	Normalized RNA data matrix
PermTest	Permutation Test
PlotSCIR	Plot SCIntRuler
SCEtoSeurat	Input and Split SingleCellExperiment Data
SCIntRuler	SCIntRuler: Integration of Single-Cell RNA-seq Datasets
sim_data_sce	My Example Dataset
sim_result	My Example Dataset
SummCluster	Get maximum number of broad clusters