Social Mixing Matrices for Infectious Disease Modelling


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Documentation for package ‘socialmixr’ version 0.3.2

Help Pages

check Check contact survey data
check.survey Check contact survey data
cite Citation for a survey
cite.survey Citation for a survey
clean Clean contact survey data
clean.survey Clean contact survey data
contact_matrix Generate a contact matrix from diary survey data
download_survey Download a survey from its Zenodo repository
get_citation Citation for a survey
get_survey Get a survey, either from its Zenodo repository, a set of files, or a survey variable
is_doi Checks if a character string is a DOI
limits_to_agegroups Convert lower age limits to age groups.
list_surveys List all surveys available for download
load_survey Load a survey from local files
matrix_plot Draws an image plot of a contact matrix with a legend strip and the numeric values in the cells.
polymod Social contact data from 8 European countries
pop_age Change age groups in population data
reduce_agegroups Reduce the number of age groups given a broader set of limits
survey Contact survey
survey_countries List all countries contained in a survey
wpp_age Get age-specific population data according to the World Population Prospects 2017 edition
wpp_countries List all countries and regions for which socialmixr has population data