clusters |
Cluster bar plot |
clusters_ts |
Cluster timeseries plot |
dssp |
DSSP plot for secondary structure elements (proteins) |
dssp_ts |
DSSP timeseries plot for secondary structure elements (proteins) |
hbond |
Plot hydrogen bond summary |
hbond_ts |
Plot hydrogen bond timeseries |
load_clusters |
Loading cluster information |
load_clusters_ts |
Loading timeseries cluster information |
load_dssp |
Load DSSP information |
load_dssp_ts |
Load DSSP timeseries |
load_hbond |
Loading hydrogen bond data |
load_hbond_ts |
Loading hydrogen bonds timeseries |
load_noe |
Loading NOE violations |
load_ramachandran |
Load dihedral information (Ramachandran plot input) |
load_rmsd |
Loading function for 'rmsd()' |
load_rmsf |
Loading function for 'rmsf()' |
load_TIcurve |
Loading function for thermodynamic integration function 'TIcurve()' |
load_timeseries |
Loading function for 'timeseries()' |
load_xrmsd |
Loading function for 'xrmsd()' |
MDplot_argument |
Arguments for bash script interface |
MDplot_argument-class |
Arguments for bash script interface |
noe |
Plot NOE violations |
ramachandran |
Ramachandran plot for two dihedral angles |
rmsd |
Root-mean-square-deviation (RMSD) plot |
rmsd_average |
Root-mean-square-deviation (RMSD) average plot |
rmsf |
Root-mean-square-fluctuation (RMSF) plot |
TIcurve |
Thermodynamic integration plot |
timeseries |
General timeseries plotting function |
translate_aminoacids |
Function to translate between canonical and GROMOS amino acid abbreviations |
xrmsd |
XRMSD plot in heatmap style |