Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Fluorescence Data
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Documentation for package ‘eemR’ version 1.0.1
Help Pages
| absorbance | CDOM absorbance data. |
| eem | eem constructor |
| eem_bind | Bind eem or eemlist |
| eem_biological_index | Calculate the biological fluorescence index (BIX) |
| eem_coble_peaks | Extract fluorescence peaks |
| eem_cut | Cut emission and/or excitation wavelengths from EEMs |
| eem_export_matlab | Export EEMs to Matlab |
| eem_extract | Extract EEM samples |
| eem_extract_blank | Extract blank EEM |
| eem_fluorescence_index | Calculate the fluorescence index (FI) |
| eem_humification_index | Calculate the fluorescence humification index (HIX) |
| eem_inner_filter_effect | Inner-filter effect correction |
| eem_names | The names of an eem or eemlist objects |
| eem_names<- | Set the sample names of an eem or eemlist objects |
| eem_peaks | Extract fluorescence peaks |
| eem_raman_normalisation | Fluorescence Intensity Calibration Using the Raman Scatter Peak of Water |
| eem_read | Read excitation-emission fluorescence matrix (eem) |
| eem_remove_blank | Blank correction |
| eem_remove_scattering | Remove Raman and Rayleigh scattering |
| eem_set_wavelengths | Set Excitation and/or Emission wavelengths |
| plot.eemlist | Surface plot of eem |
| print.eemlist | Display summary of an eemlist object |
| summary.eemlist | Display summary of an eemlist object |