refineR-package |
refineR: Reference Interval Estimation using Real-World Data (RWD) |
addGrid |
Add a grid to an existing plot. |
as.rgb |
Convert color-names or RGB-code to possibly semi-transparent RGB-code. |
ashDensity |
Estimate density of distribution employing the R package "ash" using R-wrapper function. |
BoxCox |
One-parameter Box-Cox transformation. |
calculateCostHist |
Calculate costs for a specific combinations of lambda, muVec and sigmaVec. |
defineSearchRegions |
Helper function to define search regions for mu and sigma and to get the region around the main peak 'ab' |
estimateAB |
Helper function to find region around the main peak of a distribution |
findMainPeak |
Helper function to find the main peak of a distribution |
findPeaksAndValleys |
Find the index of the peaks and valleys of the density estimation. |
findRI |
Function to estimate reference intervals for a single population |
findRoundingBase |
Estimate rounding base of the input data. |
generateHistData |
Generate list with histogram data. |
getRI |
Method to calculate reference intervals (percentiles) for objects of class 'RWDRI' |
getSumForPArea |
Helper function to calculate the amount of observed and estimated data points within specified regions around the peak. |
invBoxCox |
Inverse of the one-parameter Box-Cox transformation. |
optimizeGrid |
Helper function for grid search for mu and sigma. |
plot.RWDRI |
Standard plot method for objects of class 'RWDRI' |
pnormApprox |
Approximate calculation of CDF of normal distribution. |
print.RWDRI |
Standard print method for objects of class 'RWDRI' |
refineR |
refineR: Reference Interval Estimation using Real-World Data (RWD) |
testcase1 |
Simulated Testcase 1. |
testcase2 |
Simulated Testcase 2. |
testcase3 |
Simulated Testcase 3. |
testcase4 |
Simulated Testcase 4. |
testcase5 |
Simulated Testcase 5. |
testParam |
Helper function to find optimal parameters lambda, mu and sigma. |