Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data

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Documentation for package ‘TCGAretriever’ version 1.9.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

blcaOutputExamples	TCGAretriever Examples
expand_cases	Samples Included in a List of Samples.
fetch_all_tcgadata	Fetch All Molecular Data for a Cancer Profile of Interest.
get_cancer_studies	Retrieve the List of Cancer Studies Available at cbioportal.
get_cancer_types	Retrieve Cancer Types.
get_case_lists	Retrieve Case List Available for a Specific Cancer Study.
get_clinical_data	Retrieve Clinical Information for a Cancer Study.
get_genetic_profiles	Retrieve Genetic Profiles for a TCGA Study of Interest
get_gene_identifiers	Retrieve All Gene Identifiers
get_molecular_data	Retrieve Molecular Data corresponding to a Genetic Profile of Interest.
get_mutation_data	Retrieve Mutation Data corresponding to a Genetic Profile of Interest.
make_groups	Split Numeric Vectors in Groups.