findVariableFeatures_wfilters |
Find variable features |
getDataMatrix |
Extract data matrix from Seurat object |
getMetaPrograms |
Extract consensus gene programs (meta-programs) |
getNMFgenes |
Get list of genes for each NMF program |
multiNMF |
Run NMF on a list of Seurat objects |
multiPCA |
Run PCA on a list of Seurat objects |
plotMetaPrograms |
Visualizations for meta-programs |
runGSEA |
Run Gene set enrichment analysis |
runNMF |
Compute NMF as a low-dim embedding for Seurat |
sampleObj |
Sample dataset to test GeneNMF installation |