boot_lucid |
Inference of LUCID model based on bootstrap resampling |
check_na |
Check missing patterns in one layer of omics data Z |
estimate_lucid |
Fit LUCID models with one or multiple omics layers |
fill_data |
Impute missing data by optimizing the likelihood function |
gen_ci |
generate bootstrp ci (normal, basic and percentile) |
Istep_Z |
I-step of LUCID |
lucid |
Fit a lucid model for integrated analysis on exposure, outcome and multi-omics data, allowing for tuning |
plot_lucid |
Visualize LUCID model through a Sankey diagram |
predict_lucid |
Predict cluster assignment and outcome based on LUCID model |
print.sumlucid |
Print the output of LUCID in a nicer table |
simulated_HELIX_data |
A simulated HELIX dataset for LUCID |
sim_data |
A simulated dataset for LUCID |
summary_lucid |
Summarize results of the LUCID model |
tune_lucid |
A wrapper function to perform model selection for LUCID |