Inference for a Generalised SBM with a Split Merge Sampler

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Documentation for package ‘SBMSplitMerge’ version 1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

accept	accept 'propsbm' with the acceptance probability alpha
addblock	Add a block move
ARI	Adjusted Rand Index
blockmat	Block matrix
blockmat.blocks	Block matrix
blockmat.factor	Block matrix
blockmat.numeric	Block matrix
blockmat.sbm	Block matrix
blockmod	Block Model
blocks	Blocks object
blocktrace	plot a trace of the blocks from MCMC samples
crp	Chinese Restaurant Process
ddirichlet	Dirichlet distribution
dedges	Density of edges
dedges.numeric	likelihood of edges
dedges.sbm	Density of edges
delblock	Delete a block move
dma	Dirichlet Multinomial Allocation
drawblock.dp	Draw block membership
drawblock.gibbs	Gibbs-like reassignment of nodes to the current set of blocks
drawblocks.dp	Draw block memberships
drawblocks.gibbs	Gibbs-like reassignment of nodes to the current set of blocks
drawparams	Metropolis updates by drawing parameters
edgemod	Class for edge models
edges	Class for edge data
edges_bern	Bernoulli edge model
edges_nbin	Negative-Binomial edge model
edges_norm	Normal edge model
edges_pois	Poisson edge model
Enron	The Enron data set as extracted from 'igraph' using the script in data-raw
eval_plots	get a set of evaluation plots from MCMC samples
image.blocks	Plot blocks
image.edges	Plot
image.sbm	Plot for 'sbm' object
is.sbm	is.sbm
Macaque	The Macaque data set as extracted from 'igraph' using the script in data-raw
marglike_bern	Marginal likelihood model for Bernoulli distributed edges
marglike_norm	Marginal likelihood model for Normal distributed edges
marglike_pois	Marginal likelihood model for Poisson distributed edges
mergeavg	Merge blocks
mergeblocks	merge move block merging
mergeparams	merge parameters
mergeparams.default	Merge step: parameters
mergeparams.numeric	Merge step - parameter merging
modeblocks	modal block assignments from MCMC samples
multinom	Multinomial block assignment
nodelike	Likelihood of node assignment
numblockstrace	plot a trace of the number of blocks from MCMC samples
parammat	Parameter Matrix
parammat.blocks	Parameter Matrix
parammat.matrix	Parameter Matrix
parammat.params	Parameter Matrix
parammat.sbm	Parameter Matrix
parammod	Parameter Model
params	'params' S3 object
paramtrace	plot a trace of parameter values from MCMC samples
param_beta	Beta parameter model
param_gamma	Gamma parameter model
param_nbin	Parameter model for Negative Binomial
param_norm	Parameter model for Normal Model
plot.blocks	Plot blocks
plot.edges	Plot
plot.sbm	Plot for 'sbm' object
plotpostpairs	helper function for trace plots
postpairs	mean proportion of times two nodes were in the same block under MCMC samples
rcat	Draw draw Categorical distribution
rdirichlet	Dirichlet distribution
redges	Simulate edges
rw	Random Walk
sampler	top level sampler function
sampler.conj	Conjugate model sampler
sampler.dp	Dirichlet process sampler
sampler.gibbs	Gibbs sampling for node assignments
sampler.rj	reversible jump Markov chain Monte Carlo split-merge sampler
sbm	Class 'sbm'
sbmmod	Stochastic block model object
splitavg	split move using average to merge parameters
splitblocks	split move: blocks
splitparams	split move: parameters
splitparams.numeric	split move: 'params'
splitparams.params	split move: 'params'
StackOverflow	The Stack-Overflow data set as extracted from 'igraph' using the script in data-raw Extracted on 27/8/2019 from Kaggle (login required) using: 'library(rvest)' 'read_html("https://www.kaggle.com/stackoverflow/stack-overflow-tag-network/downloads/stack_network_links.csv/1")'
updateblock	Update the block assignment of a node
updateblock.blocks	Update the block assignment of a node
updateblock.sbm	Update the block assignment of a node
vmeasure	V-measure