accept |
accept 'propsbm' with the acceptance probability alpha |
addblock |
Add a block move |
ARI |
Adjusted Rand Index |
blockmat |
Block matrix |
blockmat.blocks |
Block matrix |
blockmat.factor |
Block matrix |
blockmat.numeric |
Block matrix |
blockmat.sbm |
Block matrix |
blockmod |
Block Model |
blocks |
Blocks object |
blocktrace |
plot a trace of the blocks from MCMC samples |
crp |
Chinese Restaurant Process |
ddirichlet |
Dirichlet distribution |
dedges |
Density of edges |
dedges.numeric |
likelihood of edges |
dedges.sbm |
Density of edges |
delblock |
Delete a block move |
dma |
Dirichlet Multinomial Allocation |
drawblock.dp |
Draw block membership |
drawblock.gibbs |
Gibbs-like reassignment of nodes to the current set of blocks |
drawblocks.dp |
Draw block memberships |
drawblocks.gibbs |
Gibbs-like reassignment of nodes to the current set of blocks |
drawparams |
Metropolis updates by drawing parameters |
edgemod |
Class for edge models |
edges |
Class for edge data |
edges_bern |
Bernoulli edge model |
edges_nbin |
Negative-Binomial edge model |
edges_norm |
Normal edge model |
edges_pois |
Poisson edge model |
Enron |
The Enron data set as extracted from 'igraph' using the script in data-raw |
eval_plots |
get a set of evaluation plots from MCMC samples |
image.blocks |
Plot blocks |
image.edges |
Plot |
image.sbm |
Plot for 'sbm' object |
is.sbm |
is.sbm |
Macaque |
The Macaque data set as extracted from 'igraph' using the script in data-raw |
marglike_bern |
Marginal likelihood model for Bernoulli distributed edges |
marglike_norm |
Marginal likelihood model for Normal distributed edges |
marglike_pois |
Marginal likelihood model for Poisson distributed edges |
mergeavg |
Merge blocks |
mergeblocks |
merge move block merging |
mergeparams |
merge parameters |
mergeparams.default |
Merge step: parameters |
mergeparams.numeric |
Merge step - parameter merging |
modeblocks |
modal block assignments from MCMC samples |
multinom |
Multinomial block assignment |
nodelike |
Likelihood of node assignment |
numblockstrace |
plot a trace of the number of blocks from MCMC samples |
parammat |
Parameter Matrix |
parammat.blocks |
Parameter Matrix |
parammat.matrix |
Parameter Matrix |
parammat.params |
Parameter Matrix |
parammat.sbm |
Parameter Matrix |
parammod |
Parameter Model |
params |
'params' S3 object |
paramtrace |
plot a trace of parameter values from MCMC samples |
param_beta |
Beta parameter model |
param_gamma |
Gamma parameter model |
param_nbin |
Parameter model for Negative Binomial |
param_norm |
Parameter model for Normal Model |
plot.blocks |
Plot blocks |
plot.edges |
Plot |
plot.sbm |
Plot for 'sbm' object |
plotpostpairs |
helper function for trace plots |
postpairs |
mean proportion of times two nodes were in the same block under MCMC samples |
rcat |
Draw draw Categorical distribution |
rdirichlet |
Dirichlet distribution |
redges |
Simulate edges |
rw |
Random Walk |
sampler |
top level sampler function |
sampler.conj |
Conjugate model sampler |
sampler.dp |
Dirichlet process sampler |
sampler.gibbs |
Gibbs sampling for node assignments |
sampler.rj |
reversible jump Markov chain Monte Carlo split-merge sampler |
sbm |
Class 'sbm' |
sbmmod |
Stochastic block model object |
splitavg |
split move using average to merge parameters |
splitblocks |
split move: blocks |
splitparams |
split move: parameters |
splitparams.numeric |
split move: 'params' |
splitparams.params |
split move: 'params' |
StackOverflow |
The Stack-Overflow data set as extracted from 'igraph' using the script in data-raw Extracted on 27/8/2019 from Kaggle (login required) using: 'library(rvest)' 'read_html("https://www.kaggle.com/stackoverflow/stack-overflow-tag-network/downloads/stack_network_links.csv/1")' |
updateblock |
Update the block assignment of a node |
updateblock.blocks |
Update the block assignment of a node |
updateblock.sbm |
Update the block assignment of a node |
vmeasure |
V-measure |