Core Functions to Read and Fit 13c Time Series from Breath Tests

[Up] [Top]

Documentation for package ‘breathtestcore’ version 0.8.7

Help Pages

AIC.breathtestnlmefit S3 AIC method for breathtestnlmefit
augment.breathtestfit Augmented prediction for breathtest fit
breathtest_data Data structure with PDR data and descriptors for breath test records
breathtest_read_function Snoop method to read breath test file
btcore_file Path to example breath test data file
cleanup_data Transforms 13C breath data into a clean format for fitting
coef.breathtestfit S3 coef and summary for breathtestfit
coef_by_group Tabulates per-group breath test parameters
coef_diff_by_group Tabulates breath test parameter differences of groups
cum_exp_beta Cumulative exponential beta function
dob_to_pdr Convert breath test DOB data to PDR data
exp_beta Exponential beta function for 13C breath data
extract_id Extracts an ID from string IRIS CSV file
nlme_fit Mixed-model nlme fit to 13C Breath Data
nls_fit Individual curve fit with nls to 13C breath test data
null_fit Convert data to class breathtestfit
plot.breathtestfit S3 plot method for breathtestfit
read_any_breathtest Read breathtest files of any format
read_breathid Read BreathID file
read_breathid_xml Read new BreathID/Examens XML file
read_breathtest_excel Reads breathtest data in Excel format
read_iris Read 13C data from IRIS/Wagner Analysen
read_iris_csv Read 13C data from IRIS/Wagner Analysen in CSV Format
sigma.breathtestnlmefit S3 method to extract the fit's residual standard deviation
simulate_breathtest_data Simulate 13C breath time series data
subsample_data Decimate densely sampled 13C time series
t50_bluck_coward Bluck-Coward self-corrected half-emptying time
t50_maes_ghoos Half-emptying time by Maes/Ghoos method
t50_maes_ghoos_scintigraphy Half-emptying time t50 from Maes/Ghoos fit with scintigraphic correction
tidy.breathtestfit Broom-style tidying methods for breathtestfit
tlag_bluck_coward Lag phase for Bluck-Coward self-correcting fit
tlag_maes_ghoos So-called lag time from Maes/Ghoos fit
usz_13c Zurich sample set of 13C breath test data
usz_13c_a Exotic 13C breath test data
usz_13c_d 13C breath test data with MRI emptying for comparison