BoSSA-package |
A Bunch of Structure and Sequence Analysis |
BoSSA |
A Bunch of Structure and Sequence Analysis |
circular_tree |
Plot an inside-out circular tree |
plot.jplace |
Plot a pplace or jplace object |
plot.pplace |
Plot a pplace or jplace object |
pplace |
A placement object as obtained with the read_sqlite function |
pplace_to_matrix |
Pplace to contingency matrix |
pplace_to_table |
Merge the multiclass and the placement table of pplace object |
pplace_to_taxonomy |
Convert a pplace object to a taxonomy table |
print.jplace |
Compact display of pplace and jplace objects |
print.pplace |
Compact display of pplace and jplace objects |
print.protdb |
Compact display of protdb object |
read_jplace |
Read a jplace file |
read_protdb |
Read Protein Data Bank (PDB) file |
read_sqlite |
Read a pplacer/guppy sqlite file |
refpkg |
Summary data and plots for reference packages |
sub_pplace |
Subsets a pplace object |
write_jplace |
Write a jplace or pplace object to the disk |