A Bunch of Structure and Sequence Analysis

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Documentation for package ‘BoSSA’ version 3.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

BoSSA-package	A Bunch of Structure and Sequence Analysis
BoSSA	A Bunch of Structure and Sequence Analysis
circular_tree	Plot an inside-out circular tree
plot.jplace	Plot a pplace or jplace object
plot.pplace	Plot a pplace or jplace object
pplace	A placement object as obtained with the read_sqlite function
pplace_to_matrix	Pplace to contingency matrix
pplace_to_table	Merge the multiclass and the placement table of pplace object
pplace_to_taxonomy	Convert a pplace object to a taxonomy table
print.jplace	Compact display of pplace and jplace objects
print.pplace	Compact display of pplace and jplace objects
print.protdb	Compact display of protdb object
read_jplace	Read a jplace file
read_protdb	Read Protein Data Bank (PDB) file
read_sqlite	Read a pplacer/guppy sqlite file
refpkg	Summary data and plots for reference packages
sub_pplace	Subsets a pplace object
write_jplace	Write a jplace or pplace object to the disk