Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation

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Documentation for package ‘RNAseqNet’ version 0.1.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

chooseSigma	Select the threshold sigma for hd-MI.
GLMnetToGraph	Convert the result of imputedGLMnetwork or a matrix into a network.
GLMnetwork	Infer a network from RNA-seq expression.
GLMpath	Methods for 'GLMpath' objects.
GLMpath-class	Methods for 'GLMpath' objects.
HDImputed	Methods for 'HDImputed' objects.
HDImputed-class	Methods for 'HDImputed' objects.
HDpath	Methods for 'HDpath' objects.
HDpath-class	Methods for 'HDpath' objects.
imputedGLMnetwork	Multiple hot-deck imputation and network inference from RNA-seq data.
imputeHD	Impute missing row datasets with multiple hot deck.
lung	RNA-seq expression from lung tissue (GTEx).
plot.HDpath	Methods for 'HDpath' objects.
plot.stars	Methods for 'stars' objects.
print.GLMpath	Methods for 'GLMpath' objects.
print.HDImputed	Methods for 'HDImputed' objects.
print.HDpath	Methods for 'HDpath' objects.
print.stars	Methods for 'stars' objects.
RNAseqNetUsersGuide	View RNAseqNet User's Guide
stabilitySelection	Selection of the regularization parameter by StARS (Liu et al., 2010).
stars	Methods for 'stars' objects.
stars-class	Methods for 'stars' objects.
summary.GLMpath	Methods for 'GLMpath' objects.
summary.HDImputed	Methods for 'HDImputed' objects.
summary.HDimputed	Methods for 'HDImputed' objects.
summary.HDpath	Methods for 'HDpath' objects.
summary.stars	Methods for 'stars' objects.
thyroid	RNA-seq expression from thyroid tissue (GTEx).
varIntra	Average intra-donor pool variance.