Create Useful Summaries of the Portal Data

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Documentation for package ‘portalr’ version 0.4.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

abundance	Generate summaries of Portal rodent data
add_seasons	Add Seasons
bait_presence_absence	Ant Bait Presence Absence
biomass	Generate summaries of Portal rodent data
check_default_data_path	Manage the default path for downloading Portal Data into
check_for_newer_data	Check for latest version of data files
clean_plant_data	Do basic cleaning of Portal plant data
clean_rodent_data	Do basic cleaning of Portal rodent data
colony_presence_absence	Ant Colony Presence Absence
download_observations	Download the PortalData repo
energy	Generate summaries of Portal rodent data
fcast_ndvi	Forecast ndvi using a seasonal auto ARIMA
fill_missing_ndvi	Fill in historic ndvi data to the complete timeseries being fit
find_incomplete_censuses	Period code for incomplete censuses
forecasting_species	Rodent species abbreviations
format_code	Format content as code
format_todo	Format content as an action to be performed by the user
format_value	Format content as a variable value
get_dataset_citation	Return Citation for Portal Data
get_default_data_path	Manage the default path for downloading Portal Data into
get_future_newmoons	Get future newmoon dates and numbers
load_ant_data	Read in the Portal data files
load_datafile	read in a raw datafile from the downloaded data or the GitHub repo
load_plant_data	Read in the Portal data files
load_rodent_data	Read in the Portal data files
load_trapping_data	Read in the Portal data files
na_conformer	Conform NA entries to "NA" entries
ndvi	NDVI by calendar month or lunar month
phenocam	Phenocam data products by day, calendar month, or lunar month
plant_abundance	Generate summaries of Portal plant data
rates	Generate summaries of Portal rodent data
return_if_null	If a Value is NULL, Trigger the Parent Function's Return
rodent_species	Rodent species abbreviations
shrub_cover	Generate percent cover from Portal plant transect data
summarise_individual_rodents	Return cleaned Portal rodent individual data
summarise_plant_data	Generate summaries of Portal plant data
summarise_rodent_data	Generate summaries of Portal rodent data
summarize_individual_rodents	Return cleaned Portal rodent individual data
summarize_plant_data	Generate summaries of Portal plant data
summarize_rodent_data	Generate summaries of Portal rodent data
use_default_data_path	Manage the default path for downloading Portal Data into
weather	Weather by day, calendar month, or lunar month
yearly	Add Seasons