$.soma_adat |
The 'soma_adat' Class and S3 Methods |
$<-.soma_adat |
The 'soma_adat' Class and S3 Methods |
==.soma_adat |
Group Generics for 'soma_adat' Class Objects |
adat-helpers |
Helpers to Extract Information from an ADAT |
adat2eSet |
Convert ADAT to ExpressionSet Object |
addAttributes |
Add Attributes to 'soma_adat' Objects |
addClass |
Add a Class to an Object |
add_rowid |
Helpers for Working With Row Names |
annotations |
Analyte Annotations, Col.Meta, and Row Info |
antilog |
Group Generics for 'soma_adat' Class Objects |
apt2seqid |
Working with SomaLogic SeqIds |
checkSomaScanVersion |
Helpers to Extract Information from an ADAT |
cleanNames |
Clean Up Character String |
Col.Meta |
Analyte Annotations, Col.Meta, and Row Info |
col2rn |
Helpers for Working With Row Names |
collapseAdats |
Load ADAT files as a list |
colmeta |
Analyte Annotations, Col.Meta, and Row Info |
diffAdats |
Diff Two ADAT Objects |
example_data |
Example Data and Objects |
ex_analytes |
Example Data and Objects |
ex_anno_tbl |
Example Data and Objects |
ex_target_names |
Example Data and Objects |
getAdatVersion |
Helpers to Extract Information from an ADAT |
getAnalyteInfo |
Get Analyte Annotation Information |
getAnalytes |
Get Analytes |
getFeatureData |
Get Analyte Annotation Information |
getFeatures |
Get Analytes |
getMeta |
Get Analytes |
getSeqId |
Working with SomaLogic SeqIds |
getSeqIdMatches |
Working with SomaLogic SeqIds |
getSignalSpace |
Helpers to Extract Information from an ADAT |
getSomamerData |
Deprecated function(s) of the 'SomaDataIO' package |
getSomamers |
Deprecated function(s) of the 'SomaDataIO' package |
getSomaScanLiftCCC |
Helpers to Extract Information from an ADAT |
getSomaScanVersion |
Helpers to Extract Information from an ADAT |
getTargetNames |
Get Analyte Annotation Information |
groupGenerics |
Group Generics for 'soma_adat' Class Objects |
has_rn |
Helpers for Working With Row Names |
is.apt |
Working with SomaLogic SeqIds |
is.intact.attributes |
Are Attributes Intact? |
is.SeqId |
Working with SomaLogic SeqIds |
is.soma_adat |
Read (Load) SomaLogic ADATs |
is_intact_attr |
Are Attributes Intact? |
is_lifted |
Lift an ADAT Between Assay Versions |
is_seqFormat |
Test 'AptName' Format |
lift_adat |
Lift an ADAT Between Assay Versions |
loadAdatsAsList |
Load ADAT files as a list |
locateSeqId |
Working with SomaLogic SeqIds |
matchSeqIds |
Working with SomaLogic SeqIds |
Math.soma_adat |
Group Generics for 'soma_adat' Class Objects |
median.soma_adat |
The 'soma_adat' Class and S3 Methods |
meltExpressionSet |
Convert to Long Format |
merge_clin |
Merge Clinical Data into SomaScan |
Ops.soma_adat |
Group Generics for 'soma_adat' Class Objects |
params |
Common Parameters in 'SomaDataIO' |
parseHeader |
SomaLogic ADAT parser |
pivotExpressionSet |
Convert to Long Format |
print.soma_adat |
The 'soma_adat' Class and S3 Methods |
read.adat |
Read (Load) SomaLogic ADATs |
read_adat |
Read (Load) SomaLogic ADATs |
read_annotations |
Import a SomaLogic Annotations File |
regexSeqId |
Working with SomaLogic SeqIds |
rm_rn |
Helpers for Working With Row Names |
rn2col |
Helpers for Working With Row Names |
rowmeta |
Analyte Annotations, Col.Meta, and Row Info |
rownames |
Helpers for Working With Row Names |
SeqId |
Working with SomaLogic SeqIds |
seqid2apt |
Working with SomaLogic SeqIds |
set_rn |
Helpers for Working With Row Names |
SomaDataIO-deprecated |
Deprecated function(s) of the 'SomaDataIO' package |
SomaScanObjects |
Example Data and Objects |
soma_adat |
The 'soma_adat' Class and S3 Methods |
Summary.soma_adat |
Group Generics for 'soma_adat' Class Objects |
summary.soma_adat |
The 'soma_adat' Class and S3 Methods |
transform |
Scale Transform 'soma_adat' Columns/Rows |
transform.soma_adat |
Scale Transform 'soma_adat' Columns/Rows |
write_adat |
Write an ADAT to File |
[.soma_adat |
The 'soma_adat' Class and S3 Methods |
[<-.soma_adat |
The 'soma_adat' Class and S3 Methods |
[[.soma_adat |
The 'soma_adat' Class and S3 Methods |
[[<-.soma_adat |
The 'soma_adat' Class and S3 Methods |