LZeroSpikeInference-package |
LZeroSpikeInference: LZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty |
cv.estimateSpikes |
Cross-validate and optimize model parameters |
estimateSpikes |
Estimate spike train, underlying calcium concentration, and changepoints based on fluorescence trace. |
LZeroSpikeInference |
LZeroSpikeInference: LZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty |
plot.cvSpike |
Plot mean squared error vs. tuning parameter from the cross-validation output |
plot.estimatedSpikes |
Plot the solution to an L0 segmentation problem |
plot.simdata |
Plot simulated data |
print.cvSpike |
Print CV results |
print.estimatedSpikes |
Print estimated spikes |
print.simdata |
Print simulated data |
simulateAR1 |
Simulate fluorescence trace based on simple AR(1) generative model |