Data Visualization for QTL Experiments
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Documentation for package ‘qtl2ggplot’ version 1.2.4
Help Pages
| autoplot.genes | Plot gene locations for a genomic interval |
| autoplot.listof_scan1coef | Plot of object of class listof_scan1coeff |
| autoplot.scan1 | Plot a genome scan |
| autoplot.scan1coef | Plot QTL effects along chromosome |
| color_patterns_get | Set up col, pattern and group for plotting. |
| color_patterns_pheno | Set up col, pattern, shape and group for plotting. |
| color_patterns_set | Set up colors for patterns or points |
| ggplot_coef | Plot QTL effects along chromosome |
| ggplot_coefCC | Plot QTL effects along chromosome |
| ggplot_genes | Plot gene locations for a genomic interval |
| ggplot_genes_internal | GGPlot internal routine for ggplot_genes |
| ggplot_listof_scan1coef | Plot of object of class listof_scan1coeff |
| ggplot_onegeno | Plot one individual's genome-wide genotypes |
| ggplot_peaks | Plot QTL peak locations |
| ggplot_pxg | Plot phenotype vs genotype |
| ggplot_scan1 | Plot a genome scan |
| ggplot_scan1_internal | Plot a genome scan |
| ggplot_snpasso | Plot SNP associations |
| listof_scan1coef | List of scan1coef objects |
| mean_pxg | Plot phenotype vs genotype |
| sdp_to_pattern | Convert sdp to pattern |
| subset.listof_scan1coef | List of scan1coef objects |
| subset_listof_scan1coef | List of scan1coef objects |
| summary.listof_scan1coef | List of scan1coef objects |
| summary.scan1 | Summary of scan1 object |
| summary.scan1coef | List of scan1coef objects |
| summary_listof_scan1coef | List of scan1coef objects |
| summary_scan1 | Summary of scan1 object |
| summary_scan1coef | List of scan1coef objects |
| [.listof_scan1coef | List of scan1coef objects |