autoplot.genes |
Plot gene locations for a genomic interval |
autoplot.listof_scan1coef |
Plot of object of class listof_scan1coeff |
autoplot.scan1 |
Plot a genome scan |
autoplot.scan1coef |
Plot QTL effects along chromosome |
color_patterns_get |
Set up col, pattern and group for plotting. |
color_patterns_pheno |
Set up col, pattern, shape and group for plotting. |
color_patterns_set |
Set up colors for patterns or points |
ggplot_coef |
Plot QTL effects along chromosome |
ggplot_coefCC |
Plot QTL effects along chromosome |
ggplot_genes |
Plot gene locations for a genomic interval |
ggplot_genes_internal |
GGPlot internal routine for ggplot_genes |
ggplot_listof_scan1coef |
Plot of object of class listof_scan1coeff |
ggplot_onegeno |
Plot one individual's genome-wide genotypes |
ggplot_peaks |
Plot QTL peak locations |
ggplot_pxg |
Plot phenotype vs genotype |
ggplot_scan1 |
Plot a genome scan |
ggplot_scan1_internal |
Plot a genome scan |
ggplot_snpasso |
Plot SNP associations |
listof_scan1coef |
List of scan1coef objects |
mean_pxg |
Plot phenotype vs genotype |
sdp_to_pattern |
Convert sdp to pattern |
subset.listof_scan1coef |
List of scan1coef objects |
subset_listof_scan1coef |
List of scan1coef objects |
summary.listof_scan1coef |
List of scan1coef objects |
summary.scan1 |
Summary of scan1 object |
summary.scan1coef |
List of scan1coef objects |
summary_listof_scan1coef |
List of scan1coef objects |
summary_scan1 |
Summary of scan1 object |
summary_scan1coef |
List of scan1coef objects |
[.listof_scan1coef |
List of scan1coef objects |