A B C D F G H L M N P Q R S T U V W
flexsurv-package | flexsurv: Flexible parametric survival and multi-state models |
AIC.fmsm | Akaike's information criterion from a flexible parametric multistate model |
AICC | Second-order Akaike information criterion |
AICc | Second-order Akaike information criterion |
AICC.flexsurvreg | Second-order Akaike information criterion |
AICc.flexsurvreg | Second-order Akaike information criterion |
ajfit | Aalen-Johansen nonparametric estimates comparable to a fitted flexsurvmix model |
ajfit_flexsurvmix | Forms a tidy data frame for plotting the fit of parametric mixture multi-state models against nonparametric estimates |
ajfit_fmsm | Check the fit of Markov flexible parametric multi-state models against nonparametric estimates. |
augment.flexsurvreg | Augment data with information from a flexsurv model object |
basis | Natural cubic spline basis |
bc | Breast cancer survival data |
BIC.flexsurvreg | Bayesian Information Criterion (BIC) for comparison of flexsurvreg models |
bootci.fmsm | Bootstrap confidence intervals for flexsurv output functions |
bos | Bronchiolitis obliterans syndrome after lung transplants |
bosms3 | Bronchiolitis obliterans syndrome after lung transplants |
bosms4 | Bronchiolitis obliterans syndrome after lung transplants |
coef.flexsurvreg | Extract model coefficients from fitted flexible survival models |
coxsnell_flexsurvreg | Cox-Snell residuals from a parametric survival model |
dbasis | Natural cubic spline basis |
dfss | Natural cubic spline basis |
dgenf | Generalized F distribution |
dgenf.orig | Generalized F distribution (original parameterisation) |
dgengamma | Generalized gamma distribution |
dgengamma.orig | Generalized gamma distribution (original parameterisation) |
dgompertz | The Gompertz distribution |
dllogis | The log-logistic distribution |
dsurvspline | Royston/Parmar spline survival distribution |
dsurvspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dsurvspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dsurvspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dsurvspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dsurvspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dsurvspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dsurvspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dsurvspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
dweibullPH | Weibull distribution in proportional hazards parameterisation |
flexsurv | flexsurv: Flexible parametric survival and multi-state models |
flexsurv.dists | Flexible parametric regression for time-to-event data |
flexsurvmix | Flexible parametric mixture models for times to competing events |
flexsurvreg | Flexible parametric regression for time-to-event data |
flexsurvrtrunc | Flexible parametric models for right-truncated, uncensored data defined by times of initial and final events. |
flexsurvspline | Flexible survival regression using the Royston/Parmar spline model. |
fmixmsm | Constructor for a mixture multi-state model based on flexsurvmix |
fmsm | Construct a multi-state model from a set of parametric survival models |
fss | Natural cubic spline basis |
GenF | Generalized F distribution |
GenF.orig | Generalized F distribution (original parameterisation) |
GenGamma | Generalized gamma distribution |
GenGamma.orig | Generalized gamma distribution (original parameterisation) |
get_basepars | Evaluate baseline time-to-event distribution parameters given covariate values in a flexsurvmix model |
glance.flexsurvreg | Glance at a flexsurv model object |
Gompertz | The Gompertz distribution |
hazard | Hazard and cumulative hazard functions |
Hexp | Hazard and cumulative hazard functions |
hexp | Hazard and cumulative hazard functions |
Hgamma | Hazard and cumulative hazard functions |
hgamma | Hazard and cumulative hazard functions |
Hgenf | Generalized F distribution |
hgenf | Generalized F distribution |
Hgenf.orig | Generalized F distribution (original parameterisation) |
hgenf.orig | Generalized F distribution (original parameterisation) |
Hgengamma | Generalized gamma distribution |
hgengamma | Generalized gamma distribution |
Hgengamma.orig | Generalized gamma distribution (original parameterisation) |
hgengamma.orig | Generalized gamma distribution (original parameterisation) |
Hgompertz | The Gompertz distribution |
hgompertz | The Gompertz distribution |
Hllogis | The log-logistic distribution |
hllogis | The log-logistic distribution |
Hlnorm | Hazard and cumulative hazard functions |
hlnorm | Hazard and cumulative hazard functions |
hr_flexsurvreg | Hazard ratio as a function of time from a parametric survival model |
Hsurvspline | Royston/Parmar spline survival distribution |
hsurvspline | Royston/Parmar spline survival distribution |
Hsurvspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hsurvspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hsurvspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hsurvspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hsurvspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hsurvspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hsurvspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hsurvspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
hsurvspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
Hweibull | Hazard and cumulative hazard functions |
hweibull | Hazard and cumulative hazard functions |
HweibullPH | Weibull distribution in proportional hazards parameterisation |
hweibullPH | Weibull distribution in proportional hazards parameterisation |
lines.flexsurvreg | Add fitted flexible survival curves to a plot |
lines.survrtrunc | Plot nonparametric estimates of survival from right-truncated data. |
Llogis | The log-logistic distribution |
logLik.flexsurvreg | Log likelihood from a flexsurvreg model |
meanfinal_fmixmsm | Mean time to final state in a mixture multi-state model |
means | Mean and restricted mean survival functions |
mean_exp | Mean and restricted mean survival functions |
mean_flexsurvmix | Mean times to events from a flexsurvmix model |
mean_gamma | Mean and restricted mean survival functions |
mean_genf | Mean and restricted mean survival functions |
mean_genf.orig | Mean and restricted mean survival functions |
mean_gengamma | Mean and restricted mean survival functions |
mean_gengamma.orig | Mean and restricted mean survival functions |
mean_gompertz | Mean and restricted mean survival functions |
mean_llogis | Mean and restricted mean survival functions |
mean_lnorm | Mean and restricted mean survival functions |
mean_survspline | Royston/Parmar spline survival distribution |
mean_survspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_survspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_survspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_survspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_survspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_survspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_survspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_survspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
mean_weibull | Mean and restricted mean survival functions |
mean_weibullPH | Mean and restricted mean survival functions |
model.frame.flexsurvmix | Model frame from a flexsurvmix object |
model.frame.flexsurvreg | Extract original data from 'flexsurvreg' objects. |
model.matrix.flexsurvreg | Extract original data from 'flexsurvreg' objects. |
msfit.flexsurvreg | Cumulative intensity function for parametric multi-state models |
nobs.flexsurvreg | Number of observations contributing to a fitted flexible survival model |
normboot.flexsurvreg | Simulate from the asymptotic normal distribution of parameter estimates. |
pars.fmsm | Transition-specific parameters in a flexible parametric multi-state model |
pdf_flexsurvmix | Fitted densities for times to events in a flexsurvmix model |
pfinal_fmsm | Probabilities of final states in a flexible parametric competing risks model |
pgenf | Generalized F distribution |
pgenf.orig | Generalized F distribution (original parameterisation) |
pgengamma | Generalized gamma distribution |
pgengamma.orig | Generalized gamma distribution (original parameterisation) |
pgompertz | The Gompertz distribution |
pllogis | The log-logistic distribution |
plot.flexsurvreg | Plots of fitted flexible survival models |
plot.standsurv | Plot standardized metrics from a fitted flexsurv model |
plot.survrtrunc | Plot nonparametric estimates of survival from right-truncated data. |
pmatrix.fs | Transition probability matrix from a fully-parametric, time-inhomogeneous Markov multi-state model |
pmatrix.simfs | Transition probability matrix from a fully-parametric, semi-Markov multi-state model |
ppath_fmixmsm | Probability of each pathway taken through a mixture multi-state model |
predict.flexsurvreg | Predictions from flexible survival models |
probs_flexsurvmix | Probabilities of competing events from a flexsurvmix model |
psurvspline | Royston/Parmar spline survival distribution |
psurvspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
psurvspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
psurvspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
psurvspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
psurvspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
psurvspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
psurvspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
psurvspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
pweibullPH | Weibull distribution in proportional hazards parameterisation |
p_flexsurvmix | Transition probabilities from a flexsurvmix model |
qfinal_fmixmsm | Quantiles of the distribution of the time until reaching a final state in a mixture multi-state model |
qgeneric | Generic function to find quantiles of a distribution |
qgenf | Generalized F distribution |
qgenf.orig | Generalized F distribution (original parameterisation) |
qgengamma | Generalized gamma distribution |
qgengamma.orig | Generalized gamma distribution (original parameterisation) |
qgompertz | The Gompertz distribution |
qllogis | The log-logistic distribution |
qsurvspline | Royston/Parmar spline survival distribution |
qsurvspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
qsurvspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
qsurvspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
qsurvspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
qsurvspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
qsurvspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
qsurvspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
qsurvspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
quantile_flexsurvmix | Quantiles of time-to-event distributions in a flexsurvmix model |
qweibullPH | Weibull distribution in proportional hazards parameterisation |
residuals.flexsurvreg | Calculate residuals for flexible survival models |
rgenf | Generalized F distribution |
rgenf.orig | Generalized F distribution (original parameterisation) |
rgengamma | Generalized gamma distribution |
rgengamma.orig | Generalized gamma distribution (original parameterisation) |
rgompertz | The Gompertz distribution |
rllogis | The log-logistic distribution |
rmst_exp | Mean and restricted mean survival functions |
rmst_flexsurvmix | Restricted mean times to events from a flexsurvmix model |
rmst_gamma | Mean and restricted mean survival functions |
rmst_generic | Generic function to find restricted mean survival time for some distribution |
rmst_genf | Mean and restricted mean survival functions |
rmst_genf.orig | Mean and restricted mean survival functions |
rmst_gengamma | Mean and restricted mean survival functions |
rmst_gengamma.orig | Mean and restricted mean survival functions |
rmst_gompertz | Mean and restricted mean survival functions |
rmst_llogis | Mean and restricted mean survival functions |
rmst_lnorm | Mean and restricted mean survival functions |
rmst_survspline | Royston/Parmar spline survival distribution |
rmst_survspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_survspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_survspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_survspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_survspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_survspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_survspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_survspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rmst_weibull | Mean and restricted mean survival functions |
rmst_weibullPH | Mean and restricted mean survival functions |
rsurvspline | Royston/Parmar spline survival distribution |
rsurvspline0 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rsurvspline1 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rsurvspline2 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rsurvspline3 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rsurvspline4 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rsurvspline5 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rsurvspline6 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rsurvspline7 | Royston/Parmar spline survival distribution functions with one argument per parameter |
rweibullPH | Weibull distribution in proportional hazards parameterisation |
sim.fmsm | Simulate paths through a fully parametric semi-Markov multi-state model |
simfinal_fmsm | Simulate and summarise final outcomes from a flexible parametric multi-state model |
simfs_bytrans | Reformat simulated multi-state data with one row per simulated transition |
simt_flexsurvmix | Simulate times to competing events from a mixture multi-state model |
simulate.flexsurvreg | Simulate censored time-to-event data from a fitted flexsurvreg model |
standsurv | Marginal survival and hazards of fitted flexsurvreg models |
summary.flexsurvreg | Summaries of fitted flexible survival models |
summary.flexsurvrtrunc | Summarise quantities of interest from fitted flexsurvrtrunc models |
survrtrunc | Nonparametric estimator of survival from right-truncated, uncensored data |
Survspline | Royston/Parmar spline survival distribution |
Survsplinek | Royston/Parmar spline survival distribution functions with one argument per parameter |
tidy.flexsurvreg | Tidy a flexsurv model object |
tidy.standsurv | Tidy a standsurv object. |
totlos.fs | Total length of stay in particular states for a fully-parametric, time-inhomogeneous Markov multi-state model |
totlos.simfs | Expected total length of stay in specific states, from a fully-parametric, semi-Markov multi-state model |
unroll.function | Convert a function with matrix arguments to a function with vector arguments. |
vcov.flexsurvreg | Variance-covariance matrix from a flexsurvreg model |
WeibullPH | Weibull distribution in proportional hazards parameterisation |