Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree


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Documentation for package ‘Apoderoides’ version 2.0.0

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autoDeletion autoDeletion
calc.Score calc.Score
calcIntScore_C Internal Apoderoides Functions
calcOutScore_C Internal Apoderoides Functions
deleteAnomaly deleteAnomaly
deleteSubFunc Internal Apoderoides Functions
extractOTUbyRankName_C Internal Apoderoides Functions
findSubTips_C Internal Apoderoides Functions
findUpperNode Internal Apoderoides Functions
get.upperRank get.upperRank
getAllCentroids getAllCentroids
getAllCentroids_C Internal Apoderoides Functions
getAllMRCAs getAllMRCAs
getAllRankNames Internal Apoderoides Functions
getRankCentroid_C Internal Apoderoides Functions
getRankMRCA Internal Apoderoides Functions
getTipNo_C Internal Apoderoides Functions
is.monophyleticByRank Internal Apoderoides Functions
testRankList testRankList
testTree testTree