Spatial Ecology Miscellaneous Methods
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Documentation for package ‘ecospat’ version 4.1.1
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| ecospat-package | Spatial Ecology Miscellaneous Methods |
| ecospat | Spatial Ecology Miscellaneous Methods |
| ecospat.adj.D2.glm | Calculate An Adjusted D2 |
| ecospat.binary.model | Generate Binary Models |
| ecospat.boyce | Calculate Boyce Index |
| ecospat.calculate.pd | Calculate Phylogenetic Diversity Measures |
| ecospat.caleval | Calibration And Evaluation Dataset |
| ecospat.CCV.communityEvaluation.bin | Calculates a range of community evaluation metrics based on different thresholding techniques. |
| ecospat.CCV.communityEvaluation.prob | Evaluates community predictions directly on the probabilities (i.e., threshold independent) |
| ecospat.CCV.createDataSplitTable | Creates a DataSplitTable for usage in ecospat.ccv.modeling. |
| ecospat.CCV.modeling | Runs indivudual species distribuion models with SDMs or ESMs |
| ecospat.climan | A climate analogy setection tool for the modeling of species distributions |
| ecospat.cohen.kappa | Cohen's Kappa |
| ecospat.CommunityEval | Community Evaluation |
| ecospat.cons_Cscore | Constrained Co-Occurrence Analysis. |
| ecospat.cor.plot | Correlation Plot |
| ecospat.co_occurrences | Species Co-Occurrences |
| ecospat.Cscore | Pairwise co-occurrence Analysis with calculation of the C-score index. |
| ecospat.cv.gbm | GBM Cross Validation |
| ecospat.cv.glm | GLM Cross Validation |
| ecospat.cv.me | Maxent Cross Validation |
| ecospat.cv.rf | RandomForest Cross Validation |
| ecospat.Epred | Prediction Mean |
| ecospat.ESM.EnsembleEvaluation | Ensemble of Small Models: Evaluation via the Pooling procedure |
| ecospat.ESM.EnsembleModeling | Ensemble of Small Models: Evaluates and Averages Simple Bivariate Models To ESMs |
| ecospat.ESM.EnsembleProjection | Ensemble of Small Models: Projects Calibrated ESMs Into New Space Or Time. |
| ecospat.ESM.Modeling | Ensemble of Small Models: Calibration of Simple Bivariate Models |
| ecospat.ESM.Projection | Ensemble of Small Models: Projects Simple Bivariate Models Into New Space Or Time |
| ecospat.ESM.responsePlot | Produce response plots for ESMs |
| ecospat.ESM.threshold | Thresholds for Ensemble of Small Models |
| ecospat.ESM.VarContrib | Variable contribution in ESM |
| ecospat.grid.clim.dyn | Dynamic Occurrence Densities Grid |
| ecospat.mantel.correlogram | Mantel Correlogram |
| ecospat.margin | Delineation of the distribution's margin and its uncertainty |
| ecospat.max.kappa | Maximum Kappa |
| ecospat.max.tss | Maximum TSS |
| ecospat.maxentvarimport | Maxent Variable Importance |
| ecospat.mdr | Minimum Dispersal Routes) |
| ecospat.mess | MESS |
| ecospat.meva.table | Model Evaluation For A Given Threshold Value |
| ecospat.mpa | Minimal Predicted Area |
| ecospat.niche.dyn.index | Niche Pioneering, Expansion, Stability, Unfilling and Abandonment |
| ecospat.niche.dynIndexProjGeo | Projection of niche dynamic indices to the Geography |
| ecospat.niche.equivalency.test | Niche Equivalency Test |
| ecospat.niche.overlap | Calculate Niche Overlap |
| ecospat.niche.similarity.test | Niche Similarity Test |
| ecospat.niche.zProjGeo | Projection of Occurrence Densities to the Geography |
| ecospat.nicheNBmean | Niche position and niche breadth) |
| ecospat.nichePOSNB | Niche position and niche breadth) |
| ecospat.npred | Number Of Predictors |
| ecospat.occ.desaggregation | Species Occurrences Desaggregation |
| ecospat.occupied.patch | Extract occupied patches of a species in geographic space.) |
| ecospat.permut.glm | GLM Permutation Function |
| ecospat.plot.contrib | Plot Variables Contribution |
| ecospat.plot.kappa | Plot Kappa |
| ecospat.plot.mess | Plot MESS |
| ecospat.plot.niche | Plot Niche |
| ecospat.plot.niche.dyn | Plot of categories of Niche dynamics and Species Density |
| ecospat.plot.overlap.test | Plot Overlap Test |
| ecospat.plot.tss | Plot True skill statistic (TSS) |
| ecospat.poolingEvaluation | Evaluation of species distribution models using the pooling procedure |
| ecospat.rand.pseudoabsences | Sample Pseudo-Absences |
| ecospat.rangesize | Quantification of the range size of a species using habitat suitability maps and IUCN criteria) |
| ecospat.rcls.grd | Reclassifying grids function |
| ecospat.recstrat_prop | Random Ecologically Stratified Sampling of propotional numbers |
| ecospat.recstrat_regl | Random Ecologically Stratified Sampling of equal numbers |
| ecospat.sample.envar | Sample Environmental Variables |
| ecospat.SESAM.prr | SESAM Probability Ranking Rule |
| ecospat.shift.centroids | Draw Centroid Arrows |
| ecospat.testData | Test Data For The Ecospat package |
| ecospat.testEnv | Test Environmental SpatRasters for The Ecospat package |
| ecospat.testMdr | Test Data For The ecospat.mdr function |
| ecospat.testNiche | Test Data For The Niche Overlap Analysis |
| ecospat.testNiche.inv | Test Data For The Niche Dynamics Analysis In The Invaded Range Of A Hypothetical Species |
| ecospat.testNiche.nat | Test Data For The Niche Dynamics Analysis In The Native Range Of A Hypothetical Species |
| ecospat.testNichePOSNB | Test AVS Dataset For The Ecospat package |
| ecospat.testTree | Test Tree For The Ecospat package |
| ecospat.varpart | Variation Partitioning For GLM Or GAM |