Expression Data Analysis and Visualization
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Documentation for package ‘tinyarray’ version 2.4.2
Help Pages
| box_surv | box_surv |
| cod | cod |
| cor.full | cor.test for all variables |
| cor.one | cor.test for one variable with all variables |
| corheatmap | corheatmap |
| corscatterplot | corscatterplot |
| deg | deg |
| deseq_data | deseq_data |
| double_enrich | draw enrichment bar plots for both up and down genes |
| draw_boxplot | draw boxplot for expression |
| draw_heatmap | draw a heatmap plot |
| draw_heatmap2 | draw heatmap plots |
| draw_KM | draw_KM |
| draw_pca | draw PCA plots |
| draw_tsne | draw_tsne |
| draw_venn | draw a venn plot |
| draw_volcano | draw a volcano plot |
| draw_volcano2 | draw_volcano2 |
| dumd | count unique values in every columns for data.frame |
| edges_to_nodes | edges_to_nodes |
| exists_anno_list | exists_anno_list |
| exprSet_hub1 | exprSet_hub1 |
| exp_boxplot | exp_boxplot |
| exp_hub1 | exp_hub1 |
| exp_surv | exp_surv |
| find_anno | find annotation package or files |
| genes | genes |
| geo_download | geo_download |
| get_cgs | get_cgs |
| get_count_txt | get count from GEO |
| get_deg | get_deg |
| get_deg_all | get_deg_all |
| get_gpl_txt | get gpl txt from GEO |
| ggheat | ggheat |
| hypertest | hypertest |
| interaction_to_edges | interaction_to_edges |
| intersect_all | intersect_all |
| lnc_anno | lnc_anno |
| lnc_annov23 | lnc_annov23 |
| make_tcga_group | make_tcga_group |
| match_exp_cl | match_exp_cl |
| meta1 | meta1 |
| mRNA_anno | mRNA_anno |
| mRNA_annov23 | mRNA_annov23 |
| multi_deg | multi_deg |
| multi_deg_all | multi_deg_all |
| pkg_all | pkg_all |
| plcortest | plcortest |
| plot_deg | plot_deg |
| point_cut | point_cut |
| quick_enrich | quick_enrich |
| risk_plot | risk_plot |
| sam_filter | sam_filter |
| surv_cox | surv_cox |
| surv_KM | surv_KM |
| trans_array | trans_array |
| trans_entrezexp | trans_entrezexp |
| trans_exp | trans_exp |
| trans_exp_new | trans_exp_new |
| t_choose | t_choose |
| union_all | union_all |