Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling


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Documentation for package ‘BAS’ version 1.5.5

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BAS-package BAS: Bayesian Model Averaging using Bayesian Adaptive Sampling
AIC.prior Information Criterion Families of Prior Distribution for Coefficients in BMA Models
aic.prior Information Criterion Families of Prior Distribution for Coefficients in BMA Models
BAS BAS: Bayesian Model Averaging using Bayesian Adaptive Sampling
bas Bayesian Adaptive Sampling for Bayesian Model Averaging and Variable Selection in Linear Models
bas.glm Bayesian Adaptive Sampling Without Replacement for Variable Selection in Generalized Linear Models
bas.lm Bayesian Adaptive Sampling for Bayesian Model Averaging and Variable Selection in Linear Models
Bayes.outlier Bayesian Outlier Detection
bayesglm.fit Fitting Generalized Linear Models and Bayesian marginal likelihood evaluation
Bernoulli Independent Bernoulli Prior Distribution for Models
bernoulli Independent Bernoulli Prior Distribution for Models
Bernoulli.heredity Independent Bernoulli prior on models that with constraints for model hierarchy induced by interactions
Beta.Binomial Beta-Binomial Prior Distribution for Models
beta.binomial Beta-Binomial Prior Distribution for Models
beta.prime Beta-Prime Prior Distribution for Coefficients in BMA Model
BIC.prior Information Criterion Families of Prior Distribution for Coefficients in BMA Models
bic.prior Information Criterion Families of Prior Distribution for Coefficients in BMA Models
Bodyfat Bodyfat Data
bodyfat Bodyfat Data
CCH Generalized g-Prior Distribution for Coefficients in BMA Models
climate Climate Data
coef Coefficients of a Bayesian Model Average object
coef.bas Coefficients of a Bayesian Model Average object
coefficients Coefficients of a Bayesian Model Average object
coefficients.bas Coefficients of a Bayesian Model Average object
confint Compute Credible Intervals for BAS regression coefficients from BAS objects
confint.coef.bas Compute Credible Intervals for BAS regression coefficients from BAS objects
confint.pred.bas Compute Credible (Bayesian Confidence) Intervals for a BAS predict object
cv.summary.bas Summaries for Out of Sample Prediction
diagnostics BAS MCMC diagnostic plot
EB Empirical Bayes Prior Distribution for Coefficients in BMA Model
EB.global Find the global Empirical Bayes estimates for BMA
EB.global.bas Find the global Empirical Bayes estimates for BMA
EB.local Empirical Bayes Prior Distribution for Coefficients in BMA Model
eplogprob eplogprob - Compute approximate marginal inclusion probabilities from pvalues
eplogprob.marg eplogprob.marg - Compute approximate marginal inclusion probabilities from pvalues
fitted Fitted values for a BAS BMA objects
fitted.bas Fitted values for a BAS BMA objects
force.heredity.bas Post processing function to force constraints on interaction inclusion bas BMA objects
g.prior Families of G-Prior Distribution for Coefficients in BMA Models
Hald Hald Data
hald Hald Data
hyper.g Hyper-g-Prior Distribution for Coefficients in BMA Models
hyper.g.n Generalized hyper-g/n Prior Distribution for g for mixtures of g-priors on Coefficients in BMA Models
hypergeometric1F1 Confluent hypergeometric2F1 function
hypergeometric2F1 Gaussian hypergeometric2F1 function
IC.prior Information Criterion Families of Prior Distribution for Coefficients in BMA Models
image Images of models used in Bayesian model averaging
image.bas Images of models used in Bayesian model averaging
intrinsic Intrinsic Prior Distribution for Coefficients in BMA Models
Jeffreys Jeffreys Prior Distribution for $g$ for Mixtures of g-Priors for Coefficients in BMA Models
list2matrix Coerce a BAS list object into a matrix.
list2matrix.bas Coerce a BAS list object into a matrix.
list2matrix.which Coerce a BAS list object into a matrix.
phi1 Compound Confluent hypergeometric function of two variables
plot.bas Plot Diagnostics for an BAS Object
plot.coef.bas Plots the posterior distributions of coefficients derived from Bayesian model averaging
plot.confint.bas Plot Bayesian Confidence Intervals
predict Prediction Method for an object of class BAS
predict.bas Prediction Method for an object of class BAS
predict.basglm Prediction Method for an Object of Class basglm
print Print a Summary of Bayesian Model Averaging objects from BAS
print.bas Print a Summary of Bayesian Model Averaging objects from BAS
print.coef.bas Coefficients of a Bayesian Model Average object
protein Protein Activity Data
robust Robust-Prior Distribution for Coefficients in BMA Model
summary Summaries of Bayesian Model Averaging objects from BAS
summary.bas Summaries of Bayesian Model Averaging objects from BAS
tCCH Generalized tCCH g-Prior Distribution for Coefficients in BMA Models
testBF.prior Test based Bayes Factors for BMA Models
TG Generalized g-Prior Distribution for Coefficients in BMA Models
tr.Beta.Binomial Truncated Beta-Binomial Prior Distribution for Models
tr.beta.binomial Truncated Beta-Binomial Prior Distribution for Models
tr.Poisson Truncated Poisson Prior Distribution for Models
tr.poisson Truncated Poisson Prior Distribution for Models
tr.Power.Prior Truncated Power Prior Distribution for Models
tr.power.prior Truncated Power Prior Distribution for Models
Uniform Uniform Prior Distribution for Models
uniform Uniform Prior Distribution for Models
update Update BAS object using a new prior
update.bas Update BAS object using a new prior
variable.names Extract the variable names for a model from a BAS prediction object
variable.names.pred.bas Extract the variable names for a model from a BAS prediction object
which.matrix Coerce a BAS list object of models into a matrix.