Statistical Analysis of Contingency Tables


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Documentation for package ‘contingencytables’ version 1.0.2

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A B C E F G I J K L M N P Q R S T U W Z misc

-- A --

Adjusted_inv_sinh_CI_OR_2x2 The adjusted inverse hyperbolic sine confidence interval for the odds ratio
Adjusted_inv_sinh_CI_ratio_2x2 The adjusted inverse hyperbolic sine confidence interval for the ratio of probabilities
Adjusted_log_CI_2x2 The adjusted log confidence interval for the ratio of probabilities
AgrestiCaffo_CI_2x2 The Agresti-Caffo confidence interval for the difference between probabilities
AgrestiCoull_CI_1x2 The Agresti-Coull confidence interval for the binomial probability
Arcsine_CI_1x2 Arcsine confidence interval

-- B --

BaptistaPike_exact_conditional_CI_2x2 The Baptista-Pike exact conditional confidence interval for the odds ratio
BaptistaPike_midP_CI_2x2 The Baptista-Pike mid-P confidence interval for the odds ratio
Bhapkar_test_paired_cxc The Bhapkar test for marginal homogeneity
Blaker_exact_CI_1x2 The Blaker exact confidence interval
Blaker_exact_test_1x2 The Blaker exact test
Blaker_midP_CI_1x2 The Blaker mid-P confidence interval for the binomial probability
Blaker_midP_test_1x2 The Blaker mid-P test
BonettPrice_hybrid_Wilson_score_CI_CC_paired_2x2 The Bonett-Price hybrid Wilson score confidence interval for the ratio of paired probabilities
BonettPrice_hybrid_Wilson_score_CI_paired_2x2 The Bonett-Price hybrid Wilson score confidence interval for the ratio of paired probabilities
Bonferroni_type_CIs_paired_cxc Bonferroni-type confidence intervals for differences of marginal probabilities
Bonferroni_type_CIs_rxc The Bonferroni-type simultaneous confidence intervals for the differences pi_1|i - pi_1|j
Brant_test_2xc The Brant test for the proportional odds assumption
BreslowDay_homogeneity_test_stratified_2x2 The Breslow-Day test of homogeneity of odds ratios over strata

-- C --

Chacko_test_1xc The Chacko test for order-restriction
chap1 Chapter 1: Introduction
chap10 Chapter 10: Stratified 2x2 Tables and Meta-Analysis
chap2 Chapter 2: The 1x2 Table and the Binomial Distribution
chap3 Chapter 3: The 1xc Table and the Multinomial Distribution
chap4 Chapter 4: The 2x2 Table
chap5 Chapter 5: The Ordered rx2 Table
chap6 Chapter 6: The Ordered 2xc Table
chap7 Chapter 7: The rxc Table
chap8 Chapter 8: The Paired 2x2 Table
chap9 Chapter 9: The Paired cxc Table
ClopperPearson_exact_CI_1x2 The Clopper-Pearson exact confidence interval
ClopperPearson_exact_CI_1x2_beta_version The Clopper-Pearson exact confidence interval for the binomial probability (beta version)
ClopperPearson_midP_CI_1x2 The Clopper-Pearson mid-P confidence interval
CochranArmitage_CI_rx2 The Cochran-Armitage confidence interval for trend in the linear model
CochranArmitage_exact_cond_midP_tests_rx2 The Cochran-Armitage exact conditional and mid-P tests
CochranArmitage_MH_tests_rx2 The Cochran-Armitage, modified Cochran-Armitage, and Mantel-Haenszel tests for trend
CochranMantelHaenszel_test_stratified_2x2 The Cochran-Mantel-Haenszel test of a common odds ratio
Cochran_Q_test_stratified_2x2 The Cochran Q test of homogeneity of effects over strata
contingencytables Statistical Analysis of Contingency tables
Cornfield_exact_conditional_CI_2x2 The Cornfield exact conditional confidence interval for the odds ratio
Cornfield_midP_CI_2x2 The Cornfield mid-P confidence interval for the odds ratio
Cumulative_models_for_2xc Cumulative logit and probit models
Cumulative_models_for_rxc Cumulative logit and probit models

-- E --

Exact_binomial_test_1x2 The exact binomial test for the binomial probability (pi)
Exact_cond_midP_linear_rank_tests_2xc Exact conditional and mid-P linear rank tests
Exact_cond_midP_tests_rxc Exact conditional and mid-P tests for the rxc table
Exact_cond_midP_unspecific_ordering_rx2 The exact conditional and mid-P tests for unspecific ordering
Exact_multinomial_test_1xc The exact multinomial test for multinomial probabilities
Exact_unconditional_test_2x2 Exact unconditional test for association in 2x2 tables

-- F --

FisherFreemanHalton_asymptotic_test_rxc The Fisher-Freeman-Halton asymptotic test for unordered rxc tables
Fisher_exact_test_2x2 The Fisher exact test for association in 2x2 tables
Fisher_midP_test_2x2 The Fisher mid-P test for association in 2x2 tables
FleissEveritt_test_paired_cxc The Fleiss-Everitt version of the Stuart test for marginal homogeneity
FleissLevinPaik_test_paired_cxc The Fleiss-Levin-Paik test for three-level ordinal outcomes

-- G --

gamma_coefficient_rxc The gamma coefficient
gamma_coefficient_rxc_bca The gamma coefficient with the bias-corrected and accelerated boostrap confidence interval
Gart_adjusted_logit_CI_2x2 The Gart adjusted logit confidence interval for the odds ratio
Gold_Wald_CIs_1xc The Gold Wald simultaneous intervals for the multinomial probabilities
Goodman_Wald_CIs_1xc The Goodman Wald simultaneous intervals for the multinomial probabilities
Goodman_Wald_CIs_for_diffs_1xc The Goodman Wald simultaneous intervals for the differences between the
Goodman_Wilson_score_CIs_1xc The Goodman Wilson score simultaneous intervals for the multinomial probabilities

-- I --

Independence_smoothed_logit_CI_2x2 The Independence-smoothed logit confidence interval for the odds ratio
InverseVariance_estimate_stratified_2x2 The inverse variance estimate of the overall effect across strata
Inv_sinh_CI_OR_2x2 The inverse hyperbolic sine confidence interval for the odds ratio
Inv_sinh_CI_ratio_2x2 The inverse hyperbolic sine confidence interval for the ratio of probabilities

-- J --

Jeffreys_CI_1x2 Jeffreys confidence interval for the binomial probability
JonckheereTerpstra_test_rxc The Jonckheere-Terpstra test for association

-- K --

Katz_log_CI_2x2 The Katz log confidence interval for the ratio of probabilities
Kendalls_tau_b_rxc Kendall's tau-b with confidence interval based on the Fieller standard deviation
Kendalls_tau_b_rxc_bca Kendall's tau-b with the bias-corrected and accelerated boostrap confidence interval
Koopman_asymptotic_score_CI_2x2 The Koopman asymptotic score confidence interval for the ratio of probabilities
KruskalWallis_asymptotic_test_rxc The Kruskal-Wallis asymptotic test for singly ordered rxc tables

-- L --

linear_by_linear_test_rxc The linear-by-linear test for association
list_functions List functions from a chapter
LR_CI_1x2 The likelihood ratio confidence interval for the binomial probability
LR_test_1x2 The likelihood ratio test for the binomial probability (pi)
LR_test_1xc The likelihood ratio test for multinomial probabilities
LR_test_2x2 The likelihood ratio test for association in 2x2 tables

-- M --

MantelHaenszel_estimate_stratified_2x2 The Mantel-Haenszel estimate of the overall effect across strata
MantelHaenszel_test_2xc The Mantel-Haenszel test of association with column scores
McNemarBowker_test_paired_cxc The McNemar-Bowker test for marginal symmetry
McNemar_asymptotic_test_CC_paired_2x2 The McNemar asymptotic test with continuity correction
McNemar_asymptotic_test_paired_2x2 The McNemar asymptotic test
McNemar_exact_cond_test_paired_2x2 The McNemar exact conditional test
McNemar_exact_unconditional_test_paired_2x2 The McNemar exact unconditional test
McNemar_midP_test_paired_2x2 The McNemar mid-P test
Mee_asymptotic_score_CI_2x2 The Mee asymptotic score confidence interval for the difference between probabilities
MidP_binomial_test_1x2 The mid-P binomial test for the binomial probability (pi)
MidP_multinomial_test_1xc The mid-P multinomial test for multinomial probabilities
MiettinenNurminen_asymptotic_score_CI_difference_2x2 The Mietinen-Nurminen asymptotic score confidence interval for the
MiettinenNurminen_asymptotic_score_CI_OR_2x2 The Miettinen-Nurminen asymptotic score CI for the odds ratio
MiettinenNurminen_asymptotic_score_CI_ratio_2x2 The Miettinen-Nurminen asymptotic score confidence interval for the ratio of probabilities
ML_estimates_and_CIs_stratified_2x2 Maximum likelihood estimates with CIs of the grouping and strata effects
MOVER_R_Wilson_CI_OR_2x2 The MOVER-R Wilson confidence interval for the odds ratio
MOVER_R_Wilson_CI_ratio_2x2 The MOVER-R Wilson confidence interval for the ratio of probabilities
MOVER_Wilson_score_CI_paired_2x2 The MOVER Wilson score confidence interval for the ratio of paired probabilities

-- N --

Newcombe_hybrid_score_CI_2x2 The Newcombe hybrid score confidence interval for the difference between probabilities
Newcombe_square_and_add_CI_paired_2x2 The Newcombe square-and-add confidence interval for the difference

-- P --

Pearson_chi_squared_test_1xc The Pearson chi-squared test for multinomial probabilities
Pearson_chi_squared_test_2x2 The Pearson chi-squared test for association in 2x2 tables
Pearson_chi_squared_test_CC_2x2 The Pearson chi-squared test for association in 2x2 tables
Pearson_correlation_coefficient_rxc The Pearson correlation coefficient
Pearson_correlation_coefficient_rxc_bca The Pearson correlation coefficient with the bias-corrected and accelerated
Pearson_LR_homogeneity_test_stratified_2x2 The Pearson chi-squared and likelihood ratio tests for homogeneity over strata
Pearson_LR_tests_cum_OR_2xc The Pearson chi-squared and likelihood ratio tests for cumulative ORs in 2xc tables
Pearson_LR_tests_rxc The Pearson chi-squared and likelihood ratio tests for association in rxc tables
Pearson_LR_tests_unspecific_ordering_rx2 The Pearson chi-squared and likelihood ratio tests for unspecific ordering in rx2 tables
Pearson_LR_test_common_effect_stratified_2x2 The Pearson chi-squared and likelihood ratio tests of a common difference
Pearson_residuals_rxc The Pearson residuals and the standardized Pearson residuals
Peto_homogeneity_test_stratified_2x2 The Peto test for homogeneity of odds ratios over strata
Peto_OR_estimate_stratified_2x2 The Peto estimate of the common odds ratio across strata
PriceBonett_approximate_Bayes_CI_2x2 The Price-Bonett approximate Bayes confidence interval for the ratio of probabilities

-- Q --

QuesenberryHurst_Wilson_score_CIs_1xc The Quesenberry-Hurst Wilson score simultaneous intervals for the multinomial probabilities

-- R --

RBG_test_and_CI_stratified_2x2 The RBG test and CI for a common odds ratio

-- S --

Scheffe_type_CIs_paired_cxc ScheffE-type confidence intervals for differences of marginal probabilities
Scheffe_type_CIs_rxc The ScheffE-type simultaneous confidence intervals for the differences pi_1|i - pi_1|j
Score_test_1x2 The score test for the binomial probability (pi)
Score_test_and_CI_marginal_mean_scores_paired_cxc Score test and CI marginal mean scores paired CxC
Score_test_CC_1x2 The score test with continuity correction for the
Score_test_for_effect_in_the_probit_model_2xc Score test for effect in the cumulative probit model
Spearman_correlation_coefficient_rxc The Spearman correlation coefficient
Spearman_correlation_coefficient_rxc_bca The Spearman correlation coefficient with the bias-corrected and accelerated
stratified_2x2_tables Stratified 2x2 tables
Stuart_test_paired_cxc The Stuart test for marginal homogeneity

-- T --

Tango_asymptotic_score_CI_paired_2x2 The Tango asymptotic score confidence interval for the difference between paired probabilities
Tang_asymptotic_score_CI_paired_2x2 The Tang asymptotic score confidence interval for the ratio of paired probabilities
the_1x2_table_CIs The 1x2 Table CIs
the_1x2_table_tests The 1x2 Table tests
the_1xc_table_CIs The 1xc table CIs
the_1xc_table_tests The 1xc table tests
the_2x2_table_CIs_difference The 2x2 table CIs difference
the_2x2_table_CIs_OR The 2x2 table CIs odds ratio
the_2x2_table_CIs_ratio The 2x2 table CIs ratio
the_2x2_table_tests The 2x2 table tests
the_2xc_table The 2xc table
the_paired_2x2_table_CIs_difference The Paired 2x2 table CIs difference
the_paired_2x2_table_CIs_OR The Paired 2x2 table CIs OR
the_paired_2x2_table_CIs_ratio The Paired 2x2 table CIs ratio
the_paired_2x2_table_tests The Paired 2x2 table tests
the_paired_cxc_table_nominal The Paired CxC table - nominal
the_paired_cxc_table_ordinal The Paired CxC table - ordinal
the_rx2_table The rx2 table
the_rxc_table The rxc table
Transformed_Blaker_exact_CI_paired_2x2 The Transformed Blaker exact confidence interval for the conditional odds ratio
Transformed_Clopper_Pearson_exact_CI_paired_2x2 The Transformed Clopper-Pearson exact confidence interval for the conditional odds ratio
Transformed_Clopper_Pearson_midP_CI_paired_2x2 The Transformed Clopper-Pearson mid-P confidence interval for the conditional odds ratio
Transformed_Wilson_score_CI_paired_2x2 The Transformed Wilson score confidence interval for the conditional odds ratio
Trend_estimate_CI_tests_rx2 Trend estimate for linear and logit models

-- U --

Uncorrected_asymptotic_score_CI_2x2 The uncorrected asymptotic score confidence interval for the odds ratio

-- W --

Wald_CI_1x2 The Wald confidence interval for the binomial probability
Wald_CI_2x2 The Wald confidence interval for the difference between probabilities
Wald_CI_AgrestiMin_paired_2x2 The Wald confidence interval for the difference between paired probabilities
Wald_CI_BonettPrice_paired_2x2 The Wald confidence interval for the difference between paired probabilities
Wald_CI_CC_1x2 The Wald CI with CC for the binomial probability
Wald_CI_CC_2x2 The Wald confidence interval for the difference between probabilities
Wald_CI_diff_CC_paired_2x2 The Wald confidence interval for the difference between paired probabilities
Wald_CI_diff_paired_2x2 The Wald confidence interval for the difference between paired probabilities
Wald_CI_OR_Laplace_paired_2x2 The Wald confidence interval for the conditional odds ratio with Laplace adjustment
Wald_CI_OR_paired_2x2 The Wald confidence interval for the conditional odds ratio
Wald_CI_ratio_paired_2x2 The Wald confidence interval for the ratio of paired probabilities
Wald_test_1x2 The Wald test for the binomial probability (pi)
Wald_test_and_CI_common_diff_stratified_2x2 The Wald test and CI for a common difference between probabilities
Wald_test_and_CI_common_ratio_stratified_2x2 The Wald test and CI for a common ratio of probabilities
Wald_test_and_CI_marginal_mean_ranks_paired_cxc The Wald test and confidence interval for the difference between marginal mean ranks / ridits
Wald_test_and_CI_marginal_mean_scores_paired_cxc The Wald test and confidence interval for the difference between marginal mean scores
Wald_test_CC_1x2 The Wald test with continuity correction for the binomial probability (pi)
Wilson_score_CI_1x2 The Wilson score confidence interval
Wilson_score_CI_CC_1x2 The Wilson score confidence interval with continuity correction for the binomial probability
Woolf_logit_CI_2x2 The Woolf logit confidence interval for the odds ratio
Woolf_test_and_CI_stratified_2x2 The Woolf test and CI for a common odds ratio

-- Z --

Z_unpooled_test_2x2 The Z-unpooled test for association in 2x2 tables

-- misc --

.onAttach Prints welcome message on package load