example_rep |
Example repertoire data |
generate_ogrdb_report |
Generate OGRDB reports from specified files. |
genotype_statistics_cmd |
Collect parameters from the command line and use them to create a report and CSV file |
make_barplot_grobs |
Create a barplot for each allele, showing number of reads distributed by mutation count |
make_haplo_grobs |
Create haplotyping plots |
make_novel_base_grobs |
Create plots showing base usage at selected locations in sequences based on novel alleles |
read_input_files |
Read input files into memory |
write_genotype_file |
Write the genotype file required by OGRDB |
write_plot_file |
Create the OGRDB style plot file |