Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics

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Documentation for package ‘ogrdbstats’ version 0.5.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

example_rep	Example repertoire data
generate_ogrdb_report	Generate OGRDB reports from specified files.
genotype_statistics_cmd	Collect parameters from the command line and use them to create a report and CSV file
make_barplot_grobs	Create a barplot for each allele, showing number of reads distributed by mutation count
make_haplo_grobs	Create haplotyping plots
make_novel_base_grobs	Create plots showing base usage at selected locations in sequences based on novel alleles
read_input_files	Read input files into memory
write_genotype_file	Write the genotype file required by OGRDB
write_plot_file	Create the OGRDB style plot file