AtCatalog |
A list of TF-target genes (TG) in Arabidopsis thaliana. |
calculateEnrichmentTest |
performs enrichment analysis |
calculateEvalue |
calculates E-value |
calculateFDRBH |
calculates FDR by Benjamini and Hochberg method |
calculateQvalue |
calculates Q-value |
calculateRC |
calculates Random Control (RC) |
calculateTFactS |
calculates TFactS |
catalog |
A list of TF-target genes (TG) in TFactS. |
DEGs |
An example list of DEGs from DEMO data in TFactS. |
DEGs39 |
An example list of 39 DEGs from DEMO data in TFactS. |
example.df |
An example result of enrichment analysis |
example.list |
An example list of result of enrichment analysis |
extractTFTG |
extracts transcription factor (TF) and target gene (TG) information |
FASTcalculateRC |
calculates Random Control (RC) fastly? |
formatET |
formats the result of enrichment test (ET) |
formatRC |
formats the result of Random Control (RC) |
GenesUp_SH1H |
An example list of 74 DEGs from AtGenExpress stress dataset. |
TFactSR |
TFactSR: A package for identifying critical transcription factors. |