isa2-package |
The isa package |
generate.seeds |
Generate seed vectors for the Iterative Signature Algorithm |
images |
Image plots of biclusters |
isa |
Iterative Signature Algorithm |
isa-method |
Iterative Signature Algorithm |
isa.biclust |
Convert ISA modules to a Biclust class, as defined by the biclust package |
isa.filter.robust |
Robustness of ISA biclusters and PPA co-modules |
isa.filter.robust-method |
Robustness of ISA biclusters and PPA co-modules |
isa.in.silico |
Generate in-silico input data for biclustering algorithms |
isa.iterate |
The Iterative Signature Algorithm |
isa.iterate-method |
The Iterative Signature Algorithm |
isa.normalize |
Normalize input data for use with ISA |
isa.normalize-method |
Normalize input data for use with ISA |
isa.option |
Options for the isa package |
isa.sweep |
Create a hierarchical structure of ISA biclusters |
isa.sweep-method |
Create a hierarchical structure of ISA biclusters |
isa.unique |
Filter out biclusters that are very similar to each other |
isa.unique-method |
Filter out biclusters that are very similar to each other |
plotModules |
Image plots of biclusters |
plotModules-method |
Image plots of biclusters |
ppa |
The Ping-Pong Algorithm |
ppa-method |
The Ping-Pong Algorithm |
ppa.filter.robust |
Robustness of ISA biclusters and PPA co-modules |
ppa.filter.robust-method |
Robustness of ISA biclusters and PPA co-modules |
ppa.in.silico |
Generate in-silico input data for testing the PPA algorithm |
ppa.iterate |
The Ping-Pong Algorithm |
ppa.iterate-method |
The Ping-Pong Algorithm |
ppa.normalize |
Normalize input data for use with the PPA |
ppa.normalize-method |
Normalize input data for use with the PPA |
ppa.unique |
Filter co-modules that are very similar to each other |
ppa.unique-method |
Filter co-modules that are very similar to each other |
robustness |
Robustness of ISA biclusters and PPA co-modules |
robustness-method |
Robustness of ISA biclusters and PPA co-modules |
sweep.graph |
Create a hierarchical structure of ISA biclusters |
sweep.graph-method |
Create a hierarchical structure of ISA biclusters |