Retrieving, Organizing, and Analyzing Estuary Monitoring Data

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Documentation for package ‘SWMPr’ version 2.5.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

aggremetab	Aggregate metabolism data
aggremetab.swmpr	Aggregate metabolism data
aggreswmp	Aggregate swmpr data
aggreswmp.swmpr	Aggregate swmpr data
all_params	Import current station records from the CDMO
all_params_dtrng	Get CDMO records within a date range
apacpnut	Example nutrient data for Apalachicola Bay Cat Point station.
apacpwq	Example water quality data for Apalachicola Bay Cat Point station.
apadbwq	Example water quality data for Apalachicola Bay Dry Bar station.
apaebmet	Example weather data for Apalachicola Bay East Bay station.
calckl	Calculate oxygen mass transfer coefficient
cens_id	Flag observations above/below detection limits
cens_id.swmpr	Flag observations above/below detection limits
comb	Combine swmpr data
comb.default	Combine swmpr data
comb.swmpr	Combine swmpr data
decomp	Simple trend decomposition
decomp.default	Simple trend decomposition
decomp.swmpr	Simple trend decomposition
decompTs	Decompose a time series
decomp_cj	Simple trend decomposition of monthly swmpr data
decomp_cj.default	Simple trend decomposition of monthly swmpr data
decomp_cj.swmpr	Simple trend decomposition of monthly swmpr data
ecometab	Ecosystem metabolism
ecometab.default	Ecosystem metabolism
ecometab.swmpr	Ecosystem metabolism
gradcols	Get colors for plots
hist.swmpr	Plot swmpr using a histogram
import_local	Import local CDMO data
lines.swmpr	Plot swmpr data
map_reserve	Map a reserve
metab_day	Identify metabolic days in a time series
metab_day.default	Identify metabolic days in a time series
na.approx.swmpr	Linearly interpolate gaps
overplot	Plot multiple SWMP time series on the same y-axis
overplot.default	Plot multiple SWMP time series on the same y-axis
overplot.swmpr	Plot multiple SWMP time series on the same y-axis
oxySol	Dissolved oxygen at saturation
param_names	Get parameters of a given type
parser	Parse web results for swmpr
plot.swmpr	Plot swmpr data
plot_metab	Plot ecosystem metabolism for a swmpr object
plot_metab.swmpr	Plot ecosystem metabolism for a swmpr object
plot_quants	Create a plot of data for a single year overlaid on historical data.
plot_quants.swmpr	Create a plot of data for a single year overlaid on historical data.
plot_summary	Plot graphical summaries of SWMP data
plot_summary.swmpr	Plot graphical summaries of SWMP data
plot_wind	Create a wind rose
plot_wind.swmpr	Create a wind rose
qaqc	QAQC filtering for SWMP data
qaqc.swmpr	QAQC filtering for SWMP data
qaqcchk	Summary of QAQC flags in SWMP data
qaqcchk.swmpr	Summary of QAQC flags in SWMP data
rem_reps	Remove replicates in nutrient data
rem_reps.swmpr	Remove replicates in nutrient data
setstep	Format a swmpr time vector
setstep.default	Format a swmpr time vector
setstep.swmpr	Format a swmpr time vector
single_param	Get CDMO records for a single parameter
site_codes	Obtain metadata for all stations
site_codes_ind	Obtain metadata for a single reserve
smoother	Smooth swmpr data
smoother.default	Smooth swmpr data
smoother.swmpr	Smooth swmpr data
stat_locs	Locations of NERRS sites
subset.swmpr	Subset a swmpr object
swmpr	Create a swmpr object
time_vec	Format SWMP datetimestamp