adap.to.rc |
adap.to.rc |
add_params |
add_params |
annotate |
evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Formula, and findmain output to annotate spectra of ramclustR object |
annotation.summary |
annotation.summary() |
assign.z |
assign.z |
change.annotation |
evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Formula, and findmain output to annotate spectra of ramclustR object |
checks |
checks |
check_arguments_filter.blanks |
check_arguments_filter.blanks |
check_arguments_filter.cv |
check_arguments_filter.cv |
check_arguments_replace.na |
check_arguments_replace.na |
cmpd.summary |
cmpd.summary |
compute_do.sets |
compute_do.sets |
compute_SpecAbundAve |
compute_SpecAbundAve |
compute_wt_mean |
compute_wt_mean |
create_ramclustObj |
create_ramclustObj |
defineExperiment |
defineExperiment |
define_samples |
define_samples |
do.findmain |
do.findmain |
export.msfinder.formulas |
export MSFinder formula prediction results in tabular format. |
exportDataset |
exportDataset |
filter_blanks |
filter_blanks |
filter_good_features |
filter_good_features |
filter_signal |
filter_signal |
findfeature |
findfeature |
findmass |
findmass |
find_good_features |
find_good_features |
fooddb2msfinder |
foodb2msfinder |
get.taxon.cids |
get.taxon.cids |
getData |
getData |
getSmilesInchi |
getSmilesInchi |
get_ExpDes |
get_ExpDes |
get_instrument_platform |
get_instrument_platform |
import.adap.kdb |
import.adap.kdb |
import.msfinder.formulas |
import.msfinder.formulas |
import.msfinder.mssearch |
import.MSFinder.mssearch |
import.msfinder.structures |
write.methods |
import.sirius |
import.sirius |
impRamSearch |
impRamSearch |
manual.annotation.template |
manual.annotation.template |
mean_signal_intensities |
mean_signal_intensities |
mergeRCobjects |
mergeRCobjects |
normalized_data_batch_qc |
normalized_data_batch_qc |
normalized_data_tic |
normalized_data_tic |
order_datasets |
order_datasets |
ramclustR |
ramclustR |
rc.calibrate.ri |
rc.calibrate.ri |
rc.cmpd.filter.blanks |
rc.cmpd.filter.blanks |
rc.cmpd.filter.cv |
rc.cmpd.filter.cv |
rc.cmpd.get.classyfire |
getClassyFire |
rc.cmpd.get.pubchem |
rc.cmpd.get.pubchem |
rc.cmpd.get.smiles.inchi |
getSmilesInchi |
rc.cmpd.replace.na |
rc.cmpd.replace.na |
rc.expand.sample.names |
rc.expand.sample.names |
rc.export.msp.rc |
rc.export.msp.rc |
rc.feature.filter.blanks |
rc.feature.filter.blanks |
rc.feature.filter.cv |
rc.feature.filter.cv |
rc.feature.normalize.batch.qc |
rc.feature.normalize.batch.qc |
rc.feature.normalize.qc |
rc.feature.normalize.qc |
rc.feature.normalize.quantile |
rc.feature.normalize.quantile |
rc.feature.normalize.tic |
rc.feature.normalize.tic |
rc.feature.replace.na |
rc.feature.replace.na |
rc.get.csv.data |
rc.get.csv.data |
rc.get.df.data |
rc.get.df.data |
rc.get.xcms.data |
rc.get.xcms.data |
rc.qc |
rc.qc |
rc.ramclustr |
rc.ramclustr |
rc.remove.qc |
rc.remove.qc |
rc.restore.qc.samples |
rc.restore.qc.samples |
RCQC |
RCQC |
remove_blanks |
remove_blanks |
replace_na |
replace_na |
write.methods |
write.methods |
write.msp |
write.msp |
write_csv |
write_csv |