Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test

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Documentation for package ‘massiveGST’ version 1.2.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cut_by_logit2NES	Trim the table of results.
cut_by_NES	Trim the table of results.
cut_by_significance	Trim the table of results.
geneSets.sim	Compute the similarities between a collection of gene sets.
get_geneProfile	Load a gene-profile from a txt file.
get_geneSets_from_local_files	Load the gene-sets collection from local gmt files
get_geneSets_from_msigdbr	Get the gene-sets from the msigdbr package.
massiveGST	massive Gene-Sets Test with Mann-Whitney-Wilcoxon statistics.
massiveORT	A wrapper to fisher.test to get over representation analysis of gene sets.
plot.mGST	Graphical rendering of the enrichment analysis.
pre_ranked_list	FGFR3-TACC3 fusion positive gene profile
save_as_tsv	Save the results in tab-separeted value file
save_as_xls	Save the results in xls file format
summary.mGST	Generate summary tables
write_geneSets_to_gmt	Save a collection of gene-sets in a .gmt file format.