cut_by_logit2NES |
Trim the table of results. |
cut_by_NES |
Trim the table of results. |
cut_by_significance |
Trim the table of results. |
geneSets.sim |
Compute the similarities between a collection of gene sets. |
get_geneProfile |
Load a gene-profile from a txt file. |
get_geneSets_from_local_files |
Load the gene-sets collection from local gmt files |
get_geneSets_from_msigdbr |
Get the gene-sets from the msigdbr package. |
massiveGST |
massive Gene-Sets Test with Mann-Whitney-Wilcoxon statistics. |
massiveORT |
A wrapper to fisher.test to get over representation analysis of gene sets. |
plot.mGST |
Graphical rendering of the enrichment analysis. |
pre_ranked_list |
FGFR3-TACC3 fusion positive gene profile |
save_as_tsv |
Save the results in tab-separeted value file |
save_as_xls |
Save the results in xls file format |
summary.mGST |
Generate summary tables |
write_geneSets_to_gmt |
Save a collection of gene-sets in a .gmt file format. |